Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KJP52_RS16350 Genome accession   NZ_OX419575
Coordinates   3140285..3140929 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6121     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3135285..3145929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP52_RS16315 (NRS6121_16155) mrpB 3136477..3136908 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  KJP52_RS16320 (NRS6121_16160) mrpC 3136908..3137249 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  KJP52_RS16325 (NRS6121_16165) mrpD 3137242..3138723 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  KJP52_RS16330 (NRS6121_16170) mrpE 3138729..3139205 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  KJP52_RS16335 (NRS6121_16175) mrpF 3139205..3139489 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  KJP52_RS16340 (NRS6121_16180) mnhG 3139473..3139847 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  KJP52_RS16345 (NRS6121_16185) yuxO 3139886..3140266 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  KJP52_RS16350 (NRS6121_16190) comA 3140285..3140929 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  KJP52_RS16355 (NRS6121_16195) comP 3141010..3143319 (-) 2310 WP_015251333.1 two-component system sensor histidine kinase ComP Regulator
  KJP52_RS16360 (NRS6121_16200) comX 3143334..3143501 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  KJP52_RS16365 (NRS6121_16205) comQ 3143489..3144388 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  KJP52_RS16370 (NRS6121_16210) degQ 3144573..3144713 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  KJP52_RS16375 - 3144935..3145060 (+) 126 WP_003228793.1 hypothetical protein -
  KJP52_RS16380 (NRS6121_16215) - 3145174..3145542 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1157608 KJP52_RS16350 WP_003220716.1 3140285..3140929(-) (comA) [Bacillus subtilis isolate NRS6121]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1157608 KJP52_RS16350 WP_003220716.1 3140285..3140929(-) (comA) [Bacillus subtilis isolate NRS6121]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment