Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KJP59_RS16720 Genome accession   NZ_OX419570
Coordinates   3195727..3196371 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6134     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3190727..3201371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP59_RS16685 (NRS6134_16575) mrpB 3191919..3192350 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  KJP59_RS16690 (NRS6134_16580) mrpC 3192350..3192691 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  KJP59_RS16695 (NRS6134_16585) mrpD 3192684..3194165 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  KJP59_RS16700 (NRS6134_16590) mrpE 3194171..3194647 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  KJP59_RS16705 (NRS6134_16595) mrpF 3194647..3194931 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  KJP59_RS16710 (NRS6134_16600) mnhG 3194915..3195289 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  KJP59_RS16715 (NRS6134_16605) yuxO 3195328..3195708 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  KJP59_RS16720 (NRS6134_16610) comA 3195727..3196371 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  KJP59_RS16725 (NRS6134_16615) comP 3196452..3198761 (-) 2310 WP_015251333.1 two-component system sensor histidine kinase ComP Regulator
  KJP59_RS16730 (NRS6134_16620) comX 3198776..3198943 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  KJP59_RS16735 (NRS6134_16625) comQ 3198931..3199830 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  KJP59_RS16740 (NRS6134_16630) degQ 3200015..3200155 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  KJP59_RS16745 - 3200377..3200502 (+) 126 WP_003228793.1 hypothetical protein -
  KJP59_RS16750 (NRS6134_16635) - 3200616..3200984 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1157442 KJP59_RS16720 WP_003220716.1 3195727..3196371(-) (comA) [Bacillus subtilis isolate NRS6134]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1157442 KJP59_RS16720 WP_003220716.1 3195727..3196371(-) (comA) [Bacillus subtilis isolate NRS6134]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment