Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KJP64_RS18085 Genome accession   NZ_OX419565
Coordinates   3491927..3492616 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis isolate NRS6145     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3486927..3497616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP64_RS18050 (NRS6145_17840) flgN 3487107..3487589 (-) 483 WP_003227999.1 flagellar protein FlgN -
  KJP64_RS18055 (NRS6145_17845) flgM 3487605..3487871 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  KJP64_RS18060 (NRS6145_17850) yvyF 3487952..3488371 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  KJP64_RS18065 (NRS6145_17855) comFC 3488445..3489167 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  KJP64_RS18070 (NRS6145_17860) comFB 3489131..3489427 (-) 297 WP_003227989.1 late competence protein ComFB -
  KJP64_RS18075 (NRS6145_17865) comFA 3489487..3490878 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  KJP64_RS18080 (NRS6145_17870) fakBA 3490984..3491829 (-) 846 WP_003244125.1 DegV family protein -
  KJP64_RS18085 (NRS6145_17875) degU 3491927..3492616 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KJP64_RS18090 (NRS6145_17880) degS 3492699..3493856 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  KJP64_RS18095 (NRS6145_17885) yvyE 3494073..3494726 (+) 654 WP_003227979.1 YigZ family protein -
  KJP64_RS18100 (NRS6145_17890) tagV 3494726..3495901 (+) 1176 WP_015251114.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  KJP64_RS18105 (NRS6145_17895) tagO 3495974..3497050 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1157193 KJP64_RS18085 WP_003219701.1 3491927..3492616(-) (degU) [Bacillus subtilis isolate NRS6145]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1157193 KJP64_RS18085 WP_003219701.1 3491927..3492616(-) (degU) [Bacillus subtilis isolate NRS6145]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment