Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   C163_RS03235 Genome accession   NZ_CP007012
Coordinates   721547..722413 (-) Length   288 a.a.
NCBI ID   WP_025337611.1    Uniprot ID   A0AAI8FEW0
Organism   Pseudomonas sp. FGI182     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 716547..727413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C163_RS03205 (C163_03230) - 717332..718627 (-) 1296 WP_025337608.1 NAD(P)/FAD-dependent oxidoreductase -
  C163_RS03210 (C163_03235) - 718712..718885 (-) 174 WP_013970765.1 DUF3094 family protein -
  C163_RS03215 (C163_03240) - 719019..719648 (-) 630 WP_013970766.1 DUF1780 domain-containing protein -
  C163_RS03220 (C163_03245) - 719782..720489 (+) 708 WP_025337609.1 energy-coupling factor ABC transporter permease -
  C163_RS03225 (C163_03250) yacG 720727..720927 (-) 201 WP_003260624.1 DNA gyrase inhibitor YacG -
  C163_RS03230 (C163_03255) coaE 720924..721547 (-) 624 WP_025337610.1 dephospho-CoA kinase -
  C163_RS03235 (C163_03260) pilD 721547..722413 (-) 867 WP_025337611.1 A24 family peptidase Machinery gene
  C163_RS03240 (C163_03265) - 722416..723624 (-) 1209 WP_025337612.1 type II secretion system F family protein -
  C163_RS03245 (C163_03270) - 723841..724251 (+) 411 WP_025337613.1 pilin -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32073.29 Da        Isoelectric Point: 7.9596

>NTDB_id=115689 C163_RS03235 WP_025337611.1 721547..722413(-) (pilD) [Pseudomonas sp. FGI182]
MTLWTLLAEQPAYFLTLATVLGLLVGSFLNVLVYRLPIMLERQWQREAQEMLELPITPHERFDLWLPASRCPHCAHRIRA
WENIPVISYLALRGRCSACKTRISPRYPLVELASALLSLVVAWRFGASPEALLALPLTWCLLALSLIDAEHQLLPDALVL
PMLWLGLIVNAFGLYIPLTSALWGAVAGYLSLWTVYWLFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LAGLCLLRLRRHAMGTAIPFGPYLAIAGWIAVLWGDEIYASYTQLLGF

Nucleotide


Download         Length: 867 bp        

>NTDB_id=115689 C163_RS03235 WP_025337611.1 721547..722413(-) (pilD) [Pseudomonas sp. FGI182]
ATGACTTTATGGACTTTGCTGGCTGAGCAGCCGGCGTACTTTCTCACCCTGGCCACGGTGCTCGGCCTGCTGGTGGGCAG
TTTTCTCAATGTGCTGGTTTACCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAGGAAATGCTGGAAT
TGCCGATCACGCCGCACGAGCGTTTCGACCTGTGGTTACCCGCATCGCGCTGCCCGCATTGCGCGCACCGGATTCGCGCG
TGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGCGCGGGCGTTGTTCAGCCTGCAAAACCCGCATCAGCCCGCGCTA
CCCATTGGTGGAGTTAGCCAGCGCGCTGCTGTCGCTGGTGGTGGCCTGGCGCTTTGGTGCTTCGCCCGAGGCCTTGCTGG
CACTGCCGCTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGCGCTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAACGCCTTCGGCCTCTACATCCCGCTGACCAGCGCGCTGTGGGGCGCGGTGGC
TGGGTACCTCAGCCTTTGGACGGTGTATTGGCTGTTCAAGCTGGTCACTGGCAAGGAAGGCATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGTTGGCAGGTGTTGCCGTTGACCCTGCTGTTGTCGTCGGTGGTCGGGGCG
CTGGCTGGGCTGTGCCTGCTGCGTCTGCGCCGACATGCCATGGGTACGGCGATCCCGTTCGGGCCCTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCTTCATACACACAACTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-125)

Type IV leader peptidase family (Peptidase_A24)

(137-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

54.909

95.486

0.524
  pilD Acinetobacter baumannii D1279779

52.857

97.222

0.514
  pilD Acinetobacter nosocomialis M2

52.143

97.222

0.507
  pilD Vibrio campbellii strain DS40M4

50.534

97.569

0.493
  pilD Neisseria gonorrhoeae MS11

50.186

93.403

0.469

Multiple sequence alignment