Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   KJP72_RS13400 Genome accession   NZ_OX419557
Coordinates   2550348..2550683 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis isolate NRS6186     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2545348..2555683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP72_RS13380 (NRS6186_13335) gcvT 2545941..2547029 (-) 1089 WP_015714248.1 glycine cleavage system aminomethyltransferase GcvT -
  KJP72_RS13385 (NRS6186_13340) yqhH 2547470..2549143 (+) 1674 WP_029726726.1 SNF2-related protein -
  KJP72_RS13390 (NRS6186_13345) yqhG 2549164..2549958 (+) 795 WP_015714249.1 YqhG family protein -
  KJP72_RS13395 (NRS6186_13350) sinI 2550141..2550314 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  KJP72_RS13400 (NRS6186_13355) sinR 2550348..2550683 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  KJP72_RS13405 (NRS6186_13360) tasA 2550776..2551561 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  KJP72_RS13410 (NRS6186_13365) sipW 2551625..2552197 (-) 573 WP_072692741.1 signal peptidase I -
  KJP72_RS13415 (NRS6186_13370) tapA 2552181..2552942 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  KJP72_RS13420 (NRS6186_13375) yqzG 2553214..2553540 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  KJP72_RS13425 (NRS6186_13380) spoIIT 2553582..2553761 (-) 180 WP_029726723.1 YqzE family protein -
  KJP72_RS13430 (NRS6186_13385) comGG 2553833..2554207 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  KJP72_RS13435 (NRS6186_13390) comGF 2554208..2554591 (-) 384 WP_029726721.1 ComG operon protein ComGF Machinery gene
  KJP72_RS13440 (NRS6186_13395) comGE 2554617..2554964 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  KJP72_RS13445 (NRS6186_13400) comGD 2554948..2555379 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  KJP72_RS13450 (NRS6186_13405) comGC 2555369..2555665 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1156758 KJP72_RS13400 WP_003226345.1 2550348..2550683(+) (sinR) [Bacillus subtilis isolate NRS6186]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1156758 KJP72_RS13400 WP_003226345.1 2550348..2550683(+) (sinR) [Bacillus subtilis isolate NRS6186]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
ACAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment