Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   KJP65_RS12670 Genome accession   NZ_OX419555
Coordinates   2426112..2426447 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis isolate NRS6181     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2421112..2431447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP65_RS12650 (NRS6181_12595) gcvT 2421705..2422793 (-) 1089 WP_015714248.1 glycine cleavage system aminomethyltransferase GcvT -
  KJP65_RS12655 (NRS6181_12600) yqhH 2423234..2424907 (+) 1674 WP_029726726.1 SNF2-related protein -
  KJP65_RS12660 (NRS6181_12605) yqhG 2424928..2425722 (+) 795 WP_015714249.1 YqhG family protein -
  KJP65_RS12665 (NRS6181_12610) sinI 2425905..2426078 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  KJP65_RS12670 (NRS6181_12615) sinR 2426112..2426447 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  KJP65_RS12675 (NRS6181_12620) tasA 2426540..2427325 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  KJP65_RS12680 (NRS6181_12625) sipW 2427389..2427961 (-) 573 WP_072692741.1 signal peptidase I -
  KJP65_RS12685 (NRS6181_12630) tapA 2427945..2428706 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  KJP65_RS12690 (NRS6181_12635) yqzG 2428978..2429304 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  KJP65_RS12695 (NRS6181_12640) spoIIT 2429346..2429525 (-) 180 WP_029726723.1 YqzE family protein -
  KJP65_RS12700 (NRS6181_12645) comGG 2429597..2429971 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  KJP65_RS12705 (NRS6181_12650) comGF 2429972..2430355 (-) 384 WP_029726721.1 ComG operon protein ComGF Machinery gene
  KJP65_RS12710 (NRS6181_12655) comGE 2430381..2430728 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  KJP65_RS12715 (NRS6181_12660) comGD 2430712..2431143 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  KJP65_RS12720 (NRS6181_12665) comGC 2431133..2431429 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1156679 KJP65_RS12670 WP_003226345.1 2426112..2426447(+) (sinR) [Bacillus subtilis isolate NRS6181]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1156679 KJP65_RS12670 WP_003226345.1 2426112..2426447(+) (sinR) [Bacillus subtilis isolate NRS6181]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
ACAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment