Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   KJP65_RS12710 Genome accession   NZ_OX419555
Coordinates   2430381..2430728 (-) Length   115 a.a.
NCBI ID   WP_014480255.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6181     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2425381..2435728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP65_RS12665 (NRS6181_12610) sinI 2425905..2426078 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  KJP65_RS12670 (NRS6181_12615) sinR 2426112..2426447 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  KJP65_RS12675 (NRS6181_12620) tasA 2426540..2427325 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  KJP65_RS12680 (NRS6181_12625) sipW 2427389..2427961 (-) 573 WP_072692741.1 signal peptidase I -
  KJP65_RS12685 (NRS6181_12630) tapA 2427945..2428706 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  KJP65_RS12690 (NRS6181_12635) yqzG 2428978..2429304 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  KJP65_RS12695 (NRS6181_12640) spoIIT 2429346..2429525 (-) 180 WP_029726723.1 YqzE family protein -
  KJP65_RS12700 (NRS6181_12645) comGG 2429597..2429971 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  KJP65_RS12705 (NRS6181_12650) comGF 2429972..2430355 (-) 384 WP_029726721.1 ComG operon protein ComGF Machinery gene
  KJP65_RS12710 (NRS6181_12655) comGE 2430381..2430728 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  KJP65_RS12715 (NRS6181_12660) comGD 2430712..2431143 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  KJP65_RS12720 (NRS6181_12665) comGC 2431133..2431429 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene
  KJP65_RS12725 (NRS6181_12670) comGB 2431443..2432480 (-) 1038 WP_029726718.1 comG operon protein ComGB Machinery gene
  KJP65_RS12730 (NRS6181_12675) comGA 2432467..2433537 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  KJP65_RS12735 (NRS6181_12685) - 2433750..2433947 (-) 198 WP_029726717.1 hypothetical protein -
  KJP65_RS12740 (NRS6181_12690) corA 2433949..2434902 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 13325.35 Da        Isoelectric Point: 4.8952

>NTDB_id=1156682 KJP65_RS12710 WP_014480255.1 2430381..2430728(-) (comGE) [Bacillus subtilis isolate NRS6181]
MWRENKGFSTIETMSALSLWLFVLLTVVPLWDKLIADEKMAESREIGYQMMNESISKYVMSGEGAASKTITKNNHIYAMK
WEEEGEYQNVCIKATAYKEKSYCLSILQTEWLYAS

Nucleotide


Download         Length: 348 bp        

>NTDB_id=1156682 KJP65_RS12710 WP_014480255.1 2430381..2430728(-) (comGE) [Bacillus subtilis isolate NRS6181]
ATGTGGAGAGAAAATAAAGGTTTTTCTACAATAGAAACAATGTCTGCGCTAAGCCTGTGGCTGTTTGTGCTGCTGACAGT
CGTCCCCTTGTGGGACAAGCTGATAGCTGATGAAAAAATGGCGGAATCACGAGAAATCGGCTATCAGATGATGAATGAGA
GCATTAGCAAATATGTCATGAGTGGTGAAGGAGCCGCGTCAAAAACAATTACAAAGAACAATCATATCTATGCAATGAAG
TGGGAGGAGGAGGGCGAATATCAAAACGTATGTATCAAAGCCACAGCTTATAAAGAGAAATCATATTGCCTCAGCATCCT
GCAGACAGAATGGCTATACGCTTCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Bacillus subtilis subsp. subtilis str. 168

96.522

100

0.965

Multiple sequence alignment