Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KJP77_RS17280 Genome accession   NZ_OX419554
Coordinates   3264721..3265365 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6160     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3259721..3270365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP77_RS17245 (NRS6160_17050) mrpB 3260913..3261344 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  KJP77_RS17250 (NRS6160_17055) mrpC 3261344..3261685 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  KJP77_RS17255 (NRS6160_17060) mrpD 3261678..3263159 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  KJP77_RS17260 (NRS6160_17065) mrpE 3263165..3263641 (+) 477 WP_029318490.1 Na+/H+ antiporter subunit E -
  KJP77_RS17265 (NRS6160_17070) mrpF 3263641..3263925 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  KJP77_RS17270 (NRS6160_17075) mnhG 3263909..3264283 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  KJP77_RS17275 (NRS6160_17080) yuxO 3264322..3264702 (-) 381 WP_015714624.1 hotdog fold thioesterase -
  KJP77_RS17280 (NRS6160_17085) comA 3264721..3265365 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  KJP77_RS17285 (NRS6160_17090) comP 3265446..3267758 (-) 2313 WP_069703660.1 histidine kinase Regulator
  KJP77_RS17290 (NRS6160_17095) comX 3267774..3267995 (-) 222 WP_014480704.1 competence pheromone ComX -
  KJP77_RS17295 (NRS6160_17100) - 3267997..3268860 (-) 864 WP_043858576.1 polyprenyl synthetase family protein -
  KJP77_RS17300 (NRS6160_17105) degQ 3269045..3269185 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  KJP77_RS17305 - 3269407..3269532 (+) 126 WP_003228793.1 hypothetical protein -
  KJP77_RS17310 (NRS6160_17110) - 3269646..3270014 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1156621 KJP77_RS17280 WP_003220716.1 3264721..3265365(-) (comA) [Bacillus subtilis isolate NRS6160]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1156621 KJP77_RS17280 WP_003220716.1 3264721..3265365(-) (comA) [Bacillus subtilis isolate NRS6160]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment