Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   KJP78_RS13595 Genome accession   NZ_OX419553
Coordinates   2583404..2583751 (-) Length   115 a.a.
NCBI ID   WP_014480255.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6183     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2578404..2588751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP78_RS13550 (NRS6183_13470) sinI 2578928..2579101 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  KJP78_RS13555 (NRS6183_13475) sinR 2579135..2579470 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  KJP78_RS13560 (NRS6183_13480) tasA 2579563..2580348 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  KJP78_RS13565 (NRS6183_13485) sipW 2580412..2580984 (-) 573 WP_072692741.1 signal peptidase I -
  KJP78_RS13570 (NRS6183_13490) tapA 2580968..2581729 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  KJP78_RS13575 (NRS6183_13495) yqzG 2582001..2582327 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  KJP78_RS13580 (NRS6183_13500) spoIIT 2582369..2582548 (-) 180 WP_029726723.1 YqzE family protein -
  KJP78_RS13585 (NRS6183_13505) comGG 2582620..2582994 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  KJP78_RS13590 (NRS6183_13510) comGF 2582995..2583378 (-) 384 WP_029726721.1 ComG operon protein ComGF Machinery gene
  KJP78_RS13595 (NRS6183_13515) comGE 2583404..2583751 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  KJP78_RS13600 (NRS6183_13520) comGD 2583735..2584166 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  KJP78_RS13605 (NRS6183_13525) comGC 2584156..2584452 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene
  KJP78_RS13610 (NRS6183_13530) comGB 2584466..2585503 (-) 1038 WP_029726718.1 comG operon protein ComGB Machinery gene
  KJP78_RS13615 (NRS6183_13535) comGA 2585490..2586560 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  KJP78_RS13620 (NRS6183_13545) - 2586773..2586970 (-) 198 WP_029726717.1 hypothetical protein -
  KJP78_RS13625 (NRS6183_13550) corA 2586972..2587925 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 13325.35 Da        Isoelectric Point: 4.8952

>NTDB_id=1156522 KJP78_RS13595 WP_014480255.1 2583404..2583751(-) (comGE) [Bacillus subtilis isolate NRS6183]
MWRENKGFSTIETMSALSLWLFVLLTVVPLWDKLIADEKMAESREIGYQMMNESISKYVMSGEGAASKTITKNNHIYAMK
WEEEGEYQNVCIKATAYKEKSYCLSILQTEWLYAS

Nucleotide


Download         Length: 348 bp        

>NTDB_id=1156522 KJP78_RS13595 WP_014480255.1 2583404..2583751(-) (comGE) [Bacillus subtilis isolate NRS6183]
ATGTGGAGAGAAAATAAAGGTTTTTCTACAATAGAAACAATGTCTGCGCTAAGCCTGTGGCTGTTTGTGCTGCTGACAGT
CGTCCCCTTGTGGGACAAGCTGATAGCTGATGAAAAAATGGCGGAATCACGAGAAATCGGCTATCAGATGATGAATGAGA
GCATTAGCAAATATGTCATGAGTGGTGAAGGAGCCGCGTCAAAAACAATTACAAAGAACAATCATATCTATGCAATGAAG
TGGGAGGAGGAGGGCGAATATCAAAACGTATGTATCAAAGCCACAGCTTATAAAGAGAAATCATATTGCCTCAGCATCCT
GCAGACAGAATGGCTATACGCTTCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Bacillus subtilis subsp. subtilis str. 168

96.522

100

0.965

Multiple sequence alignment