Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   QMX76_RS03120 Genome accession   NZ_OX411212
Coordinates   650542..651159 (-) Length   205 a.a.
NCBI ID   WP_045369814.1    Uniprot ID   -
Organism   Vibrio campbellii isolate BF5_0283     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 645542..656159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMX76_RS03110 aceF 646558..648471 (+) 1914 WP_282248686.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  QMX76_RS03115 lpdA 648715..650145 (+) 1431 WP_005531721.1 dihydrolipoyl dehydrogenase -
  QMX76_RS03120 opaR 650542..651159 (-) 618 WP_045369814.1 transcriptional regulator OpaR Regulator
  QMX76_RS03125 hpt 651481..652011 (+) 531 WP_005428667.1 hypoxanthine phosphoribosyltransferase -
  QMX76_RS03130 can 652098..652766 (-) 669 WP_005531727.1 carbonate dehydratase -
  QMX76_RS03135 - 653050..654720 (+) 1671 WP_038891985.1 SulP family inorganic anion transporter -
  QMX76_RS03140 - 654960..655877 (+) 918 WP_041853462.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23723.99 Da        Isoelectric Point: 6.2206

>NTDB_id=1156278 QMX76_RS03120 WP_045369814.1 650542..651159(-) (opaR) [Vibrio campbellii isolate BF5_0283]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELTNLVSAYLDMLCIYNRDHH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=1156278 QMX76_RS03120 WP_045369814.1 650542..651159(-) (opaR) [Vibrio campbellii isolate BF5_0283]
ATGGACTCAATTGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTGATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGTCGTGGTGGTCACGCGGATATTGCAGAGATCGCTCAAGTTTCTGTTGCGACGGTAT
TTAACTACTTCCCTACTCGTGAAGATTTGGTGGATGAAGTTCTGAACCACGTTGTGCGTCAGTTCTCTAACTTCTTGTCG
GATAACATCGACTTAGACATCCACGCGCGCGAAAACATCGCCAACATCACTAATGCAATGATTGAGCTAGTAAGCCAAGA
TTGCCATTGGCTGAAAGTTTGGTTTGAGTGGAGCGCATCGACACGTGATGAAGTATGGCCATTGTTCGTGACCACAAACC
GCACTAACCAACTTCTAGTGCAAAACATGTTCATCAAAGCGATCGAGCGTGGTGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTGTTCCACGGTATTTGCTACTCTATTTTCGTACAAGCAAACCGCTCTAAGAGCGAAGCTGAGTTAAC
GAACCTAGTAAGTGCATACTTAGATATGCTATGCATCTACAACCGTGACCATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

95.588

99.512

0.951
  hapR Vibrio cholerae C6706

71.717

96.585

0.693
  hapR Vibrio cholerae strain A1552

71.717

96.585

0.693

Multiple sequence alignment