Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ALTBGP14_RS14420 | Genome accession | NZ_OX359243 |
| Coordinates | 3327639..3328532 (+) | Length | 297 a.a. |
| NCBI ID | WP_156078732.1 | Uniprot ID | - |
| Organism | Alteromonas macleodii isolate Alteromonas macleodii BGP9 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3322639..3333532
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ALTBGP14_RS14395 (ALTBGP9_02913) | ampD | 3323171..3323710 (-) | 540 | WP_101565567.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ALTBGP14_RS14400 (ALTBGP9_02914) | - | 3323894..3324412 (+) | 519 | WP_014950400.1 | TIGR02281 family clan AA aspartic protease | - |
| ALTBGP14_RS14405 (ALTBGP9_02915) | nadC | 3324445..3325299 (+) | 855 | WP_014977217.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ALTBGP14_RS14410 (ALTBGP9_02916) | - | 3325869..3326306 (+) | 438 | WP_156078730.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| ALTBGP14_RS14415 (ALTBGP9_02917) | pilC | 3326378..3327586 (+) | 1209 | WP_156078731.1 | type II secretion system F family protein | Machinery gene |
| ALTBGP14_RS14420 (ALTBGP9_02918) | pilD | 3327639..3328532 (+) | 894 | WP_156078732.1 | A24 family peptidase | Machinery gene |
| ALTBGP14_RS14425 (ALTBGP9_02919) | coaE | 3328551..3329162 (+) | 612 | WP_075176907.1 | dephospho-CoA kinase | - |
| ALTBGP14_RS14430 (ALTBGP9_02920) | zapD | 3329406..3330158 (+) | 753 | WP_039227984.1 | cell division protein ZapD | - |
| ALTBGP14_RS14435 (ALTBGP9_02921) | yacG | 3330292..3330519 (+) | 228 | WP_014950407.1 | DNA gyrase inhibitor YacG | - |
| ALTBGP14_RS14440 (ALTBGP9_02922) | - | 3330739..3331611 (+) | 873 | WP_039227982.1 | aspartoacylase | - |
| ALTBGP14_RS14445 (ALTBGP9_02923) | - | 3331699..3332988 (-) | 1290 | WP_014950409.1 | methyl-accepting chemotaxis protein | - |
| ALTBGP14_RS14450 (ALTBGP9_02924) | - | 3332998..3333366 (-) | 369 | WP_014950410.1 | response regulator | - |
Sequence
Protein
Download Length: 297 a.a. Molecular weight: 32930.98 Da Isoelectric Point: 7.0543
>NTDB_id=1155783 ALTBGP14_RS14420 WP_156078732.1 3327639..3328532(+) (pilD) [Alteromonas macleodii isolate Alteromonas macleodii BGP9]
MDAIITLSQLYPAVFYSLVFFVSLMVGSFLNVVIYRLPIMMERSWQQEYQSYFSEGEPTPNDKNSSAKEEVFNLVKPDST
CPSCGHKIRAWENVPVISYLFLRGKCAKCKVGISVRYPLVELFTALACTFAAYQFGVTSQALWAVLFTYILVALLFIDLD
KMLLPDQLTLPLLWLGLLLSTQHIFVGTTDAIIGAAAGYLSLWSVYWLFKLATGKEGMGYGDFKLLAALGAYTGWQGLPI
IILLSSFVGAIAGILIMVIQNKGKSLAIPFGPYLAVAGWLTLLFKDAIITTYLDYVL
MDAIITLSQLYPAVFYSLVFFVSLMVGSFLNVVIYRLPIMMERSWQQEYQSYFSEGEPTPNDKNSSAKEEVFNLVKPDST
CPSCGHKIRAWENVPVISYLFLRGKCAKCKVGISVRYPLVELFTALACTFAAYQFGVTSQALWAVLFTYILVALLFIDLD
KMLLPDQLTLPLLWLGLLLSTQHIFVGTTDAIIGAAAGYLSLWSVYWLFKLATGKEGMGYGDFKLLAALGAYTGWQGLPI
IILLSSFVGAIAGILIMVIQNKGKSLAIPFGPYLAVAGWLTLLFKDAIITTYLDYVL
Nucleotide
Download Length: 894 bp
>NTDB_id=1155783 ALTBGP14_RS14420 WP_156078732.1 3327639..3328532(+) (pilD) [Alteromonas macleodii isolate Alteromonas macleodii BGP9]
ATGGACGCGATAATTACGCTTAGTCAGCTTTACCCTGCTGTATTCTATTCCCTAGTCTTTTTTGTAAGTTTAATGGTTGG
CAGTTTCTTGAATGTGGTGATTTACCGCTTGCCTATTATGATGGAACGCAGCTGGCAGCAAGAGTACCAAAGCTATTTTA
GCGAGGGTGAGCCGACACCTAATGATAAAAACTCATCAGCGAAAGAAGAAGTATTCAACCTTGTAAAACCAGACAGCACA
TGCCCTAGCTGCGGCCACAAGATTCGCGCATGGGAAAATGTTCCTGTTATTAGCTACCTGTTCCTTAGAGGTAAATGCGC
TAAATGCAAAGTTGGAATATCAGTTCGATACCCGCTGGTTGAATTGTTTACTGCTTTAGCCTGTACGTTTGCGGCCTATC
AATTTGGTGTCACATCGCAAGCACTATGGGCCGTATTGTTTACCTACATACTCGTTGCTCTGCTGTTTATTGACTTAGAT
AAGATGCTATTACCTGACCAGTTGACACTGCCTCTACTGTGGTTGGGGTTACTGTTGAGCACGCAACACATTTTTGTAGG
CACCACCGACGCTATTATTGGCGCAGCGGCGGGTTATTTAAGCTTGTGGTCTGTCTACTGGCTATTTAAGCTTGCCACTG
GCAAAGAAGGCATGGGCTATGGTGATTTCAAGCTGCTCGCCGCACTTGGCGCTTATACGGGCTGGCAAGGTTTGCCCATT
ATTATTTTGCTCTCTTCGTTTGTTGGTGCAATTGCAGGCATACTCATAATGGTGATTCAAAACAAAGGTAAGTCGCTGGC
AATTCCTTTTGGTCCCTATCTCGCAGTGGCGGGTTGGCTGACACTGCTTTTTAAAGATGCCATTATTACCACCTACCTTG
ATTACGTACTTTAG
ATGGACGCGATAATTACGCTTAGTCAGCTTTACCCTGCTGTATTCTATTCCCTAGTCTTTTTTGTAAGTTTAATGGTTGG
CAGTTTCTTGAATGTGGTGATTTACCGCTTGCCTATTATGATGGAACGCAGCTGGCAGCAAGAGTACCAAAGCTATTTTA
GCGAGGGTGAGCCGACACCTAATGATAAAAACTCATCAGCGAAAGAAGAAGTATTCAACCTTGTAAAACCAGACAGCACA
TGCCCTAGCTGCGGCCACAAGATTCGCGCATGGGAAAATGTTCCTGTTATTAGCTACCTGTTCCTTAGAGGTAAATGCGC
TAAATGCAAAGTTGGAATATCAGTTCGATACCCGCTGGTTGAATTGTTTACTGCTTTAGCCTGTACGTTTGCGGCCTATC
AATTTGGTGTCACATCGCAAGCACTATGGGCCGTATTGTTTACCTACATACTCGTTGCTCTGCTGTTTATTGACTTAGAT
AAGATGCTATTACCTGACCAGTTGACACTGCCTCTACTGTGGTTGGGGTTACTGTTGAGCACGCAACACATTTTTGTAGG
CACCACCGACGCTATTATTGGCGCAGCGGCGGGTTATTTAAGCTTGTGGTCTGTCTACTGGCTATTTAAGCTTGCCACTG
GCAAAGAAGGCATGGGCTATGGTGATTTCAAGCTGCTCGCCGCACTTGGCGCTTATACGGGCTGGCAAGGTTTGCCCATT
ATTATTTTGCTCTCTTCGTTTGTTGGTGCAATTGCAGGCATACTCATAATGGTGATTCAAAACAAAGGTAAGTCGCTGGC
AATTCCTTTTGGTCCCTATCTCGCAGTGGCGGGTTGGCTGACACTGCTTTTTAAAGATGCCATTATTACCACCTACCTTG
ATTACGTACTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.439 |
95.96 |
0.532 |
| pilD | Vibrio campbellii strain DS40M4 |
53.448 |
97.643 |
0.522 |
| pilD | Acinetobacter baumannii D1279779 |
50.538 |
93.939 |
0.475 |
| pilD | Acinetobacter nosocomialis M2 |
50.179 |
93.939 |
0.471 |
| pilD | Neisseria gonorrhoeae MS11 |
47.566 |
89.899 |
0.428 |