Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | EZ55_RS14840 | Genome accession | NZ_OX359235 |
| Coordinates | 3432391..3433284 (+) | Length | 297 a.a. |
| NCBI ID | WP_156078732.1 | Uniprot ID | - |
| Organism | Alteromonas macleodii isolate Alteromonas macleodii BGP6 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3427391..3438284
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EZ55_RS14815 (ALTBGP6_02997) | ampD | 3427923..3428462 (-) | 540 | WP_101565567.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| EZ55_RS14820 (ALTBGP6_02998) | - | 3428646..3429164 (+) | 519 | WP_014950400.1 | TIGR02281 family clan AA aspartic protease | - |
| EZ55_RS14825 (ALTBGP6_02999) | nadC | 3429197..3430051 (+) | 855 | WP_014977217.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| EZ55_RS14830 (ALTBGP6_03000) | - | 3430621..3431058 (+) | 438 | WP_156078730.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| EZ55_RS14835 (ALTBGP6_03001) | pilC | 3431130..3432338 (+) | 1209 | WP_156078731.1 | type II secretion system F family protein | Machinery gene |
| EZ55_RS14840 (ALTBGP6_03002) | pilD | 3432391..3433284 (+) | 894 | WP_156078732.1 | A24 family peptidase | Machinery gene |
| EZ55_RS14845 (ALTBGP6_03003) | coaE | 3433303..3433914 (+) | 612 | WP_075176907.1 | dephospho-CoA kinase | - |
| EZ55_RS14850 (ALTBGP6_03004) | zapD | 3434158..3434910 (+) | 753 | WP_039227984.1 | cell division protein ZapD | - |
| EZ55_RS14855 (ALTBGP6_03005) | yacG | 3435044..3435271 (+) | 228 | WP_014950407.1 | DNA gyrase inhibitor YacG | - |
| EZ55_RS14860 (ALTBGP6_03006) | - | 3435491..3436363 (+) | 873 | WP_039227982.1 | aspartoacylase | - |
| EZ55_RS14865 (ALTBGP6_03007) | - | 3436451..3437740 (-) | 1290 | WP_014950409.1 | methyl-accepting chemotaxis protein | - |
| EZ55_RS14870 (ALTBGP6_03008) | - | 3437750..3438118 (-) | 369 | WP_014950410.1 | response regulator | - |
Sequence
Protein
Download Length: 297 a.a. Molecular weight: 32930.98 Da Isoelectric Point: 7.0543
>NTDB_id=1155715 EZ55_RS14840 WP_156078732.1 3432391..3433284(+) (pilD) [Alteromonas macleodii isolate Alteromonas macleodii BGP6]
MDAIITLSQLYPAVFYSLVFFVSLMVGSFLNVVIYRLPIMMERSWQQEYQSYFSEGEPTPNDKNSSAKEEVFNLVKPDST
CPSCGHKIRAWENVPVISYLFLRGKCAKCKVGISVRYPLVELFTALACTFAAYQFGVTSQALWAVLFTYILVALLFIDLD
KMLLPDQLTLPLLWLGLLLSTQHIFVGTTDAIIGAAAGYLSLWSVYWLFKLATGKEGMGYGDFKLLAALGAYTGWQGLPI
IILLSSFVGAIAGILIMVIQNKGKSLAIPFGPYLAVAGWLTLLFKDAIITTYLDYVL
MDAIITLSQLYPAVFYSLVFFVSLMVGSFLNVVIYRLPIMMERSWQQEYQSYFSEGEPTPNDKNSSAKEEVFNLVKPDST
CPSCGHKIRAWENVPVISYLFLRGKCAKCKVGISVRYPLVELFTALACTFAAYQFGVTSQALWAVLFTYILVALLFIDLD
KMLLPDQLTLPLLWLGLLLSTQHIFVGTTDAIIGAAAGYLSLWSVYWLFKLATGKEGMGYGDFKLLAALGAYTGWQGLPI
IILLSSFVGAIAGILIMVIQNKGKSLAIPFGPYLAVAGWLTLLFKDAIITTYLDYVL
Nucleotide
Download Length: 894 bp
>NTDB_id=1155715 EZ55_RS14840 WP_156078732.1 3432391..3433284(+) (pilD) [Alteromonas macleodii isolate Alteromonas macleodii BGP6]
ATGGACGCGATAATTACGCTTAGTCAGCTTTACCCTGCTGTATTCTATTCCCTAGTCTTTTTTGTAAGTTTAATGGTTGG
CAGTTTCTTGAATGTGGTGATTTACCGCTTGCCTATTATGATGGAACGCAGCTGGCAGCAAGAGTACCAAAGCTATTTTA
GCGAGGGTGAGCCGACACCTAATGATAAAAACTCATCAGCGAAAGAAGAAGTATTCAACCTTGTAAAACCAGACAGCACA
TGCCCTAGCTGCGGCCACAAGATTCGCGCATGGGAAAATGTTCCTGTTATTAGCTACCTGTTCCTTAGAGGTAAATGCGC
TAAATGCAAAGTTGGAATATCAGTTCGATACCCGCTGGTTGAATTGTTTACTGCTTTAGCCTGTACGTTTGCGGCCTATC
AATTTGGTGTCACATCGCAAGCACTATGGGCCGTATTGTTTACCTACATACTCGTTGCTCTGCTGTTTATTGACTTAGAT
AAGATGCTATTACCTGACCAGTTGACACTGCCTCTACTGTGGTTGGGGTTACTGTTGAGCACGCAACACATTTTTGTAGG
CACCACCGACGCTATTATTGGCGCAGCGGCGGGTTATTTAAGCTTGTGGTCTGTCTACTGGCTATTTAAGCTTGCCACTG
GCAAAGAAGGCATGGGCTATGGTGATTTCAAGCTGCTCGCCGCACTTGGCGCTTATACGGGCTGGCAAGGTTTGCCCATT
ATTATTTTGCTCTCTTCGTTTGTTGGTGCAATTGCAGGCATACTCATAATGGTGATTCAAAACAAAGGTAAGTCGCTGGC
AATTCCTTTTGGTCCCTATCTCGCAGTGGCGGGTTGGCTGACACTGCTTTTTAAAGATGCCATTATTACCACCTACCTTG
ATTACGTACTTTAG
ATGGACGCGATAATTACGCTTAGTCAGCTTTACCCTGCTGTATTCTATTCCCTAGTCTTTTTTGTAAGTTTAATGGTTGG
CAGTTTCTTGAATGTGGTGATTTACCGCTTGCCTATTATGATGGAACGCAGCTGGCAGCAAGAGTACCAAAGCTATTTTA
GCGAGGGTGAGCCGACACCTAATGATAAAAACTCATCAGCGAAAGAAGAAGTATTCAACCTTGTAAAACCAGACAGCACA
TGCCCTAGCTGCGGCCACAAGATTCGCGCATGGGAAAATGTTCCTGTTATTAGCTACCTGTTCCTTAGAGGTAAATGCGC
TAAATGCAAAGTTGGAATATCAGTTCGATACCCGCTGGTTGAATTGTTTACTGCTTTAGCCTGTACGTTTGCGGCCTATC
AATTTGGTGTCACATCGCAAGCACTATGGGCCGTATTGTTTACCTACATACTCGTTGCTCTGCTGTTTATTGACTTAGAT
AAGATGCTATTACCTGACCAGTTGACACTGCCTCTACTGTGGTTGGGGTTACTGTTGAGCACGCAACACATTTTTGTAGG
CACCACCGACGCTATTATTGGCGCAGCGGCGGGTTATTTAAGCTTGTGGTCTGTCTACTGGCTATTTAAGCTTGCCACTG
GCAAAGAAGGCATGGGCTATGGTGATTTCAAGCTGCTCGCCGCACTTGGCGCTTATACGGGCTGGCAAGGTTTGCCCATT
ATTATTTTGCTCTCTTCGTTTGTTGGTGCAATTGCAGGCATACTCATAATGGTGATTCAAAACAAAGGTAAGTCGCTGGC
AATTCCTTTTGGTCCCTATCTCGCAGTGGCGGGTTGGCTGACACTGCTTTTTAAAGATGCCATTATTACCACCTACCTTG
ATTACGTACTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.439 |
95.96 |
0.532 |
| pilD | Vibrio campbellii strain DS40M4 |
53.448 |
97.643 |
0.522 |
| pilD | Acinetobacter baumannii D1279779 |
50.538 |
93.939 |
0.475 |
| pilD | Acinetobacter nosocomialis M2 |
50.179 |
93.939 |
0.471 |
| pilD | Neisseria gonorrhoeae MS11 |
47.566 |
89.899 |
0.428 |