Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   QNH80_RS05890 Genome accession   NZ_OX352996
Coordinates   1199536..1200225 (-) Length   229 a.a.
NCBI ID   WP_012027645.1    Uniprot ID   -
Organism   Streptococcus suis isolate 861160_dhsdS     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1194536..1205225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH80_RS05865 - 1195006..1195719 (-) 714 WP_053861635.1 NADPH-dependent oxidoreductase -
  QNH80_RS05870 dnaI 1195716..1196615 (-) 900 WP_029174425.1 primosomal protein DnaI -
  QNH80_RS05875 - 1196615..1197766 (-) 1152 WP_029174426.1 replication initiation/membrane attachment protein -
  QNH80_RS05880 nrdR 1197753..1198244 (-) 492 WP_002938341.1 transcriptional regulator NrdR -
  QNH80_RS05885 - 1198316..1199446 (-) 1131 WP_014636113.1 AI-2E family transporter -
  QNH80_RS05890 covR 1199536..1200225 (-) 690 WP_012027645.1 winged helix-turn-helix domain-containing protein Regulator
  QNH80_RS05895 gndA 1200307..1201734 (-) 1428 WP_002942698.1 NADP-dependent phosphogluconate dehydrogenase -
  QNH80_RS05900 - 1201831..1202370 (-) 540 WP_024385904.1 DUF177 domain-containing protein -
  QNH80_RS05905 trxB 1202380..1203297 (-) 918 WP_002942687.1 thioredoxin-disulfide reductase -
  QNH80_RS05910 - 1203311..1203535 (-) 225 WP_002936682.1 DUF4059 family protein -
  QNH80_RS05915 - 1203553..1204896 (-) 1344 WP_074390039.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26255.14 Da        Isoelectric Point: 5.3968

>NTDB_id=1155622 QNH80_RS05890 WP_012027645.1 1199536..1200225(-) (covR) [Streptococcus suis isolate 861160_dhsdS]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELATELLAIKPATVMIVV
VEPTEVSQYGEEVLSYAVSYVVKPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1155622 QNH80_RS05890 WP_012027645.1 1199536..1200225(-) (covR) [Streptococcus suis isolate 861160_dhsdS]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTCTCGCATTTTGTTTCCATGGAATTGCAGAAAAAAGACTA
TCTTGTTGATTATGCATCGACAGGGAAAGAGGCTATGTCCTTGGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGCAAGGAATTGGCTACAGAACTATTAGCGATAAAACCAGCCACGGTCATGATTGTGGTA
GTTGAGCCGACTGAAGTTAGTCAATATGGGGAGGAAGTCCTCTCTTATGCTGTTTCCTACGTAGTGAAGCCCTTTGTCAT
CAGTGATTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGATTTTATTGACAATAACTGTAAACAGGTTCACATGC
ATGCGGCCTATCGTGATTTGAAGGTTGATTTTCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGTTGGCGACCTTAATGAATAGCCCAGAGCCTGTTAGTCGAGAACAACTTCTTGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATCTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATAAAAACAGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.619

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.949

100

0.432

Multiple sequence alignment