Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   QNH68_RS01290 Genome accession   NZ_OX352944
Coordinates   283199..283888 (+) Length   229 a.a.
NCBI ID   WP_012027645.1    Uniprot ID   -
Organism   Streptococcus suis isolate 861160_LM_H     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 278199..288888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH68_RS01265 - 278528..279871 (+) 1344 WP_074390039.1 DEAD/DEAH box helicase -
  QNH68_RS01270 - 279889..280113 (+) 225 WP_002936682.1 DUF4059 family protein -
  QNH68_RS01275 trxB 280127..281044 (+) 918 WP_002942687.1 thioredoxin-disulfide reductase -
  QNH68_RS01280 - 281054..281593 (+) 540 WP_024385904.1 DUF177 domain-containing protein -
  QNH68_RS01285 gndA 281690..283117 (+) 1428 WP_002942698.1 NADP-dependent phosphogluconate dehydrogenase -
  QNH68_RS01290 covR 283199..283888 (+) 690 WP_012027645.1 winged helix-turn-helix domain-containing protein Regulator
  QNH68_RS01295 - 283978..285108 (+) 1131 WP_014636113.1 AI-2E family transporter -
  QNH68_RS01300 nrdR 285180..285671 (+) 492 WP_002938341.1 transcriptional regulator NrdR -
  QNH68_RS01305 - 285658..286809 (+) 1152 WP_029174426.1 replication initiation/membrane attachment protein -
  QNH68_RS01310 dnaI 286809..287708 (+) 900 WP_029174425.1 primosomal protein DnaI -
  QNH68_RS01315 - 287705..288418 (+) 714 WP_053861635.1 NADPH-dependent oxidoreductase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26255.14 Da        Isoelectric Point: 5.3968

>NTDB_id=1155562 QNH68_RS01290 WP_012027645.1 283199..283888(+) (covR) [Streptococcus suis isolate 861160_LM_H]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELATELLAIKPATVMIVV
VEPTEVSQYGEEVLSYAVSYVVKPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1155562 QNH68_RS01290 WP_012027645.1 283199..283888(+) (covR) [Streptococcus suis isolate 861160_LM_H]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTCTCGCATTTTGTTTCCATGGAATTGCAGAAAAAAGACTA
TCTTGTTGATTATGCATCGACAGGGAAAGAGGCTATGTCCTTGGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGCAAGGAATTGGCTACAGAACTATTAGCGATAAAACCAGCCACGGTCATGATTGTGGTA
GTTGAGCCGACTGAAGTTAGTCAATATGGGGAGGAAGTCCTCTCTTATGCTGTTTCCTACGTAGTGAAGCCCTTTGTCAT
CAGTGATTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGATTTTATTGACAATAACTGTAAACAGGTTCACATGC
ATGCGGCCTATCGTGATTTGAAGGTTGATTTTCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGTTGGCGACCTTAATGAATAGCCCAGAGCCTGTTAGTCGAGAACAACTTCTTGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATCTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATAAAAACAGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.619

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.949

100

0.432

Multiple sequence alignment