Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OOL12_RS14180 Genome accession   NZ_OX344719
Coordinates   2811283..2811678 (+) Length   131 a.a.
NCBI ID   WP_061732704.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ST20190863 isolate ST20190863     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2806283..2816678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOL12_RS14150 - 2807542..2807946 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  OOL12_RS14155 - 2808284..2808376 (+) 93 WP_001790611.1 hypothetical protein -
  OOL12_RS14160 - 2808508..2808741 (+) 234 WP_000384523.1 DUF1146 family protein -
  OOL12_RS14165 murA 2808851..2810116 (+) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OOL12_RS14170 fabZ 2810150..2810590 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OOL12_RS14175 - 2810649..2811089 (-) 441 WP_000846746.1 YwpF-like family protein -
  OOL12_RS14180 ssb 2811283..2811678 (+) 396 WP_061732704.1 single-stranded DNA-binding protein Machinery gene
  OOL12_RS14185 sceD 2812067..2812762 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  OOL12_RS14190 tenA 2813148..2813837 (+) 690 WP_000396077.1 thiaminase II -
  OOL12_RS14195 thiD 2813830..2814660 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OOL12_RS14200 thiM 2814644..2815435 (+) 792 WP_061732705.1 hydroxyethylthiazole kinase -
  OOL12_RS14205 thiE 2815437..2816078 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15016.01 Da        Isoelectric Point: 5.6824

>NTDB_id=1154855 OOL12_RS14180 WP_061732704.1 2811283..2811678(+) (ssb) [Staphylococcus aureus strain ST20190863 isolate ST20190863]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTESYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1154855 OOL12_RS14180 WP_061732704.1 2811283..2811678(+) (ssb) [Staphylococcus aureus strain ST20190863 isolate ST20190863]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATCATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985

Multiple sequence alignment