Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   OGY80_RS01965 Genome accession   NZ_OX336253
Coordinates   412639..413442 (-) Length   267 a.a.
NCBI ID   WP_003680807.1    Uniprot ID   A0AAW6Y2T7
Organism   Neisseria sp. Marseille-Q5346     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 407639..418442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGY80_RS01955 - 409817..411115 (-) 1299 WP_263336771.1 adenylosuccinate synthase -
  OGY80_RS01960 - 411159..412316 (-) 1158 WP_049322192.1 ATP phosphoribosyltransferase regulatory subunit -
  OGY80_RS01965 comL 412639..413442 (-) 804 WP_003680807.1 outer membrane protein assembly factor BamD Machinery gene
  OGY80_RS01970 rluD 413441..414565 (+) 1125 WP_049348199.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OGY80_RS01975 pgeF 414648..415418 (+) 771 WP_263336788.1 peptidoglycan editing factor PgeF -
  OGY80_RS01980 lptE 415539..416018 (+) 480 WP_263336791.1 LPS assembly lipoprotein LptE -
  OGY80_RS01985 holA 416018..417019 (+) 1002 WP_263336804.1 DNA polymerase III subunit delta -
  OGY80_RS01990 - 417166..417585 (+) 420 WP_003746427.1 hypothetical protein -
  OGY80_RS01995 - 417677..418201 (+) 525 WP_263336812.1 RDD family protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31019.98 Da        Isoelectric Point: 8.5345

>NTDB_id=1154742 OGY80_RS01965 WP_003680807.1 412639..413442(-) (comL) [Neisseria sp. Marseille-Q5346]
MKKILLVVSLGLALSACANKGTIDKDAQITQDWSVEKLYAEAQDELNSNNYTRAVKLYEILESRFPNGRYAQQSQLDTAY
AYYKDDEPEKALAAIARFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYQAFAELVQRYPNS
KYAADATERMAKLVDALGGNEISVARYYMKRGAYVAAANRAQKIVSRYQNTRYVEEALAMMELAYKKLDKPQLAADTRRV
LETNFPQSPFLQHEWRSDDMPWWRYWR

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1154742 OGY80_RS01965 WP_003680807.1 412639..413442(-) (comL) [Neisseria sp. Marseille-Q5346]
ATGAAAAAAATTCTTTTAGTAGTTTCTTTAGGTTTGGCACTGAGTGCCTGCGCAAATAAAGGCACAATCGATAAAGACGC
CCAAATTACTCAAGATTGGAGTGTGGAAAAGCTTTATGCCGAAGCGCAAGACGAATTGAACAGCAACAATTATACGCGAG
CTGTCAAGTTATACGAAATTTTAGAGTCCCGTTTTCCAAACGGCCGCTATGCCCAGCAGTCCCAGTTGGATACGGCGTAT
GCCTATTATAAAGACGATGAGCCGGAAAAAGCCTTGGCTGCCATTGCGCGCTTCCAACGCCATCATCCGCAACATCCGAA
TATGGACTACGCGCTGTACTTGAAAGGTTTGGTCCTGTTTAACGAAGACCAGTCTTTCTTGAACAAGCTGGCTTCCCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGATGCTTATCAGGCGTTTGCCGAGTTGGTTCAACGTTATCCAAACAGC
AAATACGCTGCCGATGCAACCGAGCGTATGGCCAAACTGGTGGACGCTTTGGGTGGTAACGAAATATCTGTGGCGCGTTA
TTACATGAAACGCGGTGCTTATGTTGCAGCGGCCAACCGTGCGCAAAAAATCGTCAGCCGTTACCAAAATACCCGTTACG
TCGAAGAAGCTTTGGCGATGATGGAATTGGCATACAAAAAACTGGACAAGCCGCAACTGGCTGCCGATACACGCCGTGTT
TTGGAAACCAACTTCCCGCAAAGCCCGTTCTTGCAACACGAATGGCGATCTGACGATATGCCTTGGTGGCGTTACTGGCG
CTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

88.346

99.625

0.88
  comL Neisseria gonorrhoeae MS11

87.594

99.625

0.873

Multiple sequence alignment