Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | VPUCM_RS14375 | Genome accession | NZ_CP007004 |
| Coordinates | 3094150..3094665 (-) | Length | 171 a.a. |
| NCBI ID | WP_025442304.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus UCM-V493 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3089150..3099665
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VPUCM_RS14360 (VPUCM_2847) | aroB | 3090531..3091631 (-) | 1101 | WP_025442302.1 | 3-dehydroquinate synthase | - |
| VPUCM_RS14365 (VPUCM_2848) | aroK | 3091663..3092181 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| VPUCM_RS14370 (VPUCM_2849) | pilQ | 3092370..3094118 (-) | 1749 | WP_025442303.1 | type IV pilus secretin PilQ | Machinery gene |
| VPUCM_RS14375 (VPUCM_2850) | pilP | 3094150..3094665 (-) | 516 | WP_025442304.1 | pilus assembly protein PilP | Machinery gene |
| VPUCM_RS14380 (VPUCM_2851) | pilO | 3094655..3095248 (-) | 594 | WP_005480482.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| VPUCM_RS14385 (VPUCM_2852) | pilN | 3095241..3095819 (-) | 579 | WP_015297396.1 | PilN domain-containing protein | Machinery gene |
| VPUCM_RS14390 (VPUCM_2853) | pilM | 3095803..3096819 (-) | 1017 | WP_005496568.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| VPUCM_RS14395 (VPUCM_2854) | - | 3096962..3099532 (+) | 2571 | WP_005496567.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18970.17 Da Isoelectric Point: 10.5314
>NTDB_id=115471 VPUCM_RS14375 WP_025442304.1 3094150..3094665(-) (pilP) [Vibrio parahaemolyticus UCM-V493]
MRNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRVRTGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR
MRNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRVRTGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR
Nucleotide
Download Length: 516 bp
>NTDB_id=115471 VPUCM_RS14375 WP_025442304.1 3094150..3094665(-) (pilP) [Vibrio parahaemolyticus UCM-V493]
ATGAGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGAAGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGTAAGAACTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
ATGAGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGAAGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGTAAGAACTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio campbellii strain DS40M4 |
84.211 |
100 |
0.842 |
| pilP | Vibrio cholerae strain A1552 |
57.558 |
100 |
0.579 |