Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdK   Type   Machinery gene
Locus tag   OGY79_RS03995 Genome accession   NZ_OX296583
Coordinates   784576..785622 (-) Length   348 a.a.
NCBI ID   WP_018153743.1    Uniprot ID   -
Organism   Methanothermococcus thermolithotrophicus DSM 2095 isolate M. thermolithotrophicus DSM 2095     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 779576..790622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGY79_RS03970 mptA 779889..780833 (+) 945 WP_018153738.1 GTP cyclohydrolase MptA -
  OGY79_RS03975 - 781271..782368 (+) 1098 WP_018153739.1 ATP-grasp domain-containing protein -
  OGY79_RS03980 tfe 782355..782912 (+) 558 WP_018153740.1 transcription factor E -
  OGY79_RS03985 - 783027..783539 (+) 513 WP_026182928.1 TIGR00295 family protein -
  OGY79_RS03990 epdJ 783557..784441 (-) 885 WP_018153742.1 type II secretion system F family protein Machinery gene
  OGY79_RS03995 epdK 784576..785622 (-) 1047 WP_018153743.1 type II secretion system F family protein Machinery gene
  OGY79_RS04000 - 785708..788662 (-) 2955 WP_018153744.1 ATPase, T2SS/T4P/T4SS family -
  OGY79_RS04005 - 788865..789884 (-) 1020 WP_018153745.1 transcription initiation factor IIB -
  OGY79_RS04010 - 789900..790169 (-) 270 WP_018153746.1 Gar1/Naf1 family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 39218.15 Da        Isoelectric Point: 9.8201

>NTDB_id=1154661 OGY79_RS03995 WP_018153743.1 784576..785622(-) (epdK) [Methanothermococcus thermolithotrophicus DSM 2095 isolate M. thermolithotrophicus DSM 2095]
MKKSLYDSLRDSLNSILRSLGFKRKKSIIPRTVRSQYLKRVLGKKMHPEEEILEFYEPYIDETPVMKIDIDDLISKGDFG
VLDDYSKSFSYWVTHTSFLPSKRDFQYAGIADERAYFLKLILGSIATIVLFAIYGVITGNPILSIFNGLIVAVLILLGGT
LYPKIRLTLFRGEIKIQILISILHIISLLNSGASIQEALKNIATNPEYGITYFEFRNILYDINRGGYNFIEAIERAKRRT
KIGLMKKLYDQLIIAANKGGTQLLLENLYNEIVRESLSKIDSSKFQISNLGNLVFGVGMILPFAGMMQSALGGQQGFDGI
INTIDLVLTKIGPISTLVFAIFIKMKIE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1154661 OGY79_RS03995 WP_018153743.1 784576..785622(-) (epdK) [Methanothermococcus thermolithotrophicus DSM 2095 isolate M. thermolithotrophicus DSM 2095]
ATGAAAAAAAGTCTTTATGACTCGCTACGCGATAGTTTAAATAGTATTTTACGTAGTTTAGGATTTAAACGGAAAAAAAG
TATAATACCTCGTACTGTAAGATCCCAGTATTTAAAAAGAGTTTTAGGAAAAAAGATGCATCCTGAAGAGGAGATATTGG
AATTTTACGAACCCTATATTGATGAAACACCTGTAATGAAGATCGATATTGACGATTTAATATCTAAAGGTGATTTTGGA
GTTTTAGATGATTATTCTAAGTCATTTTCCTATTGGGTGACTCATACATCATTCTTACCTTCAAAGAGGGACTTCCAATA
TGCTGGAATAGCAGATGAAAGAGCATATTTTCTAAAGTTGATATTGGGTTCAATTGCAACTATTGTTTTGTTCGCCATAT
ATGGTGTAATTACAGGAAATCCAATTTTAAGTATATTTAATGGTTTGATAGTTGCAGTACTAATACTCTTAGGTGGGACT
TTATATCCTAAAATAAGACTAACACTATTTCGTGGTGAGATAAAAATCCAAATATTGATATCTATTTTACACATTATATC
TCTATTAAACTCAGGAGCATCTATTCAAGAAGCCTTAAAAAATATCGCAACCAATCCAGAATATGGGATAACATATTTTG
AATTTAGAAATATATTATACGATATCAACAGAGGGGGTTATAACTTTATTGAGGCCATTGAGAGGGCAAAAAGAAGAACA
AAAATTGGATTAATGAAAAAACTCTACGATCAGCTTATAATTGCTGCAAATAAAGGGGGAACGCAATTGCTTTTAGAAAA
TCTGTACAATGAAATCGTTAGAGAGTCATTATCAAAAATTGATTCTTCAAAATTCCAAATATCAAATTTAGGAAACCTCG
TATTTGGGGTAGGTATGATATTACCATTTGCTGGGATGATGCAATCTGCCCTTGGGGGGCAACAAGGATTTGATGGAATA
ATAAACACTATAGACCTTGTACTAACTAAAATAGGGCCTATATCCACACTGGTATTCGCAATATTTATTAAAATGAAAAT
CGAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(184-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdK Methanococcus maripaludis strain DSM 2067

66.571

100

0.67

Multiple sequence alignment