Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   OGY79_RS03990 Genome accession   NZ_OX296583
Coordinates   783557..784441 (-) Length   294 a.a.
NCBI ID   WP_018153742.1    Uniprot ID   -
Organism   Methanothermococcus thermolithotrophicus DSM 2095 isolate M. thermolithotrophicus DSM 2095     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 778557..789441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGY79_RS03965 - 778581..779807 (+) 1227 WP_018153737.1 ArsR family transcriptional regulator -
  OGY79_RS03970 mptA 779889..780833 (+) 945 WP_018153738.1 GTP cyclohydrolase MptA -
  OGY79_RS03975 - 781271..782368 (+) 1098 WP_018153739.1 ATP-grasp domain-containing protein -
  OGY79_RS03980 tfe 782355..782912 (+) 558 WP_018153740.1 transcription factor E -
  OGY79_RS03985 - 783027..783539 (+) 513 WP_026182928.1 TIGR00295 family protein -
  OGY79_RS03990 epdJ 783557..784441 (-) 885 WP_018153742.1 type II secretion system F family protein Machinery gene
  OGY79_RS03995 epdK 784576..785622 (-) 1047 WP_018153743.1 type II secretion system F family protein Machinery gene
  OGY79_RS04000 - 785708..788662 (-) 2955 WP_018153744.1 ATPase, T2SS/T4P/T4SS family -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 32422.95 Da        Isoelectric Point: 10.0343

>NTDB_id=1154660 OGY79_RS03990 WP_018153742.1 783557..784441(-) (epdJ) [Methanothermococcus thermolithotrophicus DSM 2095 isolate M. thermolithotrophicus DSM 2095]
MNIQKLYNYIVKRNILILKKAGKKIDERIFIAILLVIAIMPAILKLLLGFTTRTTLILTFVYLGSVLSIPSLLHESKIER
FERNIPKALYVMILSLESGRSVIDAINEVINSGIREVDVIFSKVIVLMTERKLSFEDAMLIVSNSIDSRIFRQLGRLIIE
NRKYGGELATTLKTLAKTLEDLQNLKAQLLSITANGLAVGLIILCGVIPATAGLIGGYLSILSQLTPSMPPISHDQIARA
VEVIQLGTGIFGLLFSIPLFGIKLNRMVITCAFCMTFGITAFYGTLYLSGVLFS

Nucleotide


Download         Length: 885 bp        

>NTDB_id=1154660 OGY79_RS03990 WP_018153742.1 783557..784441(-) (epdJ) [Methanothermococcus thermolithotrophicus DSM 2095 isolate M. thermolithotrophicus DSM 2095]
ATGAACATTCAAAAACTTTACAATTATATTGTAAAGCGTAATATATTAATACTAAAAAAAGCTGGAAAGAAAATTGATGA
GAGAATATTTATTGCCATATTACTAGTTATAGCAATAATGCCGGCAATATTAAAATTATTATTGGGTTTTACAACACGAA
CTACTTTGATATTGACTTTTGTGTATTTGGGTTCTGTGTTATCAATACCTTCCCTACTCCATGAGTCTAAAATTGAGAGA
TTTGAACGTAACATTCCAAAAGCACTTTATGTAATGATATTATCATTAGAATCCGGACGTTCAGTAATAGATGCAATCAA
CGAAGTTATAAACAGCGGTATCCGTGAAGTCGATGTCATTTTCTCAAAGGTTATTGTATTGATGACTGAGAGAAAGCTAA
GTTTTGAAGACGCTATGTTAATAGTCTCAAACTCCATCGACTCTAGGATATTCAGACAACTTGGTAGGTTGATAATTGAA
AATAGAAAATATGGAGGGGAATTGGCAACCACACTCAAAACCTTGGCAAAAACTCTCGAAGATTTACAAAATTTAAAGGC
CCAGTTGTTAAGTATTACAGCGAACGGTCTTGCAGTTGGGTTAATTATCCTTTGTGGTGTTATACCGGCAACTGCAGGTC
TAATTGGAGGTTATTTATCTATATTGTCACAATTGACACCATCAATGCCCCCCATATCACATGATCAAATCGCTAGGGCA
GTTGAAGTTATTCAATTAGGAACTGGCATATTTGGTCTTTTATTTTCAATACCCTTATTTGGCATAAAACTTAATAGGAT
GGTAATAACTTGTGCATTTTGTATGACTTTTGGAATTACGGCATTCTATGGAACATTATACCTATCTGGAGTGTTGTTTA
GCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(90-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanococcus maripaludis strain DSM 2067

70.548

99.32

0.701

Multiple sequence alignment