Detailed information    

insolico Bioinformatically predicted

Overview

Name   MMJJ_RS05685   Type   Machinery gene
Locus tag   OGY79_RS03540 Genome accession   NZ_OX296583
Coordinates   688467..688685 (-) Length   72 a.a.
NCBI ID   WP_018154238.1    Uniprot ID   -
Organism   Methanothermococcus thermolithotrophicus DSM 2095 isolate M. thermolithotrophicus DSM 2095     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 683467..693685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGY79_RS03520 - 683532..684791 (-) 1260 WP_018154242.1 phosphoadenosine phosphosulfate reductase family protein -
  OGY79_RS03525 recJ 685068..686483 (-) 1416 WP_018154241.1 single-stranded-DNA-specific exonuclease RecJ -
  OGY79_RS03530 - 686564..687235 (+) 672 WP_018154240.1 hypothetical protein -
  OGY79_RS03535 - 687372..688049 (-) 678 WP_018154239.1 metallophosphoesterase -
  OGY79_RS03540 MMJJ_RS05685 688467..688685 (-) 219 WP_018154238.1 class III signal peptide-containing protein Machinery gene
  OGY79_RS03550 - 689068..690645 (-) 1578 WP_018154237.1 COG1361 S-layer family protein -
  OGY79_RS03555 - 690658..691842 (-) 1185 WP_018154236.1 MMPL family transporter -
  OGY79_RS03560 - 691923..692381 (-) 459 WP_018154235.1 GbsR/MarR family transcriptional regulator -
  OGY79_RS03565 - 692582..692764 (+) 183 WP_018154234.1 AtpZ/AtpI family protein -

Sequence

Protein


Download         Length: 72 a.a.        Molecular weight: 7299.52 Da        Isoelectric Point: 10.4780

>NTDB_id=1154657 OGY79_RS03540 WP_018154238.1 688467..688685(-) (MMJJ_RS05685) [Methanothermococcus thermolithotrophicus DSM 2095 isolate M. thermolithotrophicus DSM 2095]
MRFLKKLASKKGQVSMEIGILVAAAVAVAAIAAYFYVKNVKGAAEKAGEGANATVGNLSSAATSKAQEISNL

Nucleotide


Download         Length: 219 bp        

>NTDB_id=1154657 OGY79_RS03540 WP_018154238.1 688467..688685(-) (MMJJ_RS05685) [Methanothermococcus thermolithotrophicus DSM 2095 isolate M. thermolithotrophicus DSM 2095]
ATGAGATTTTTAAAAAAATTAGCATCCAAAAAGGGGCAGGTTTCAATGGAAATCGGTATTTTAGTAGCTGCTGCAGTTGC
CGTTGCTGCAATAGCTGCTTACTTCTATGTGAAGAATGTTAAAGGAGCTGCAGAAAAAGCAGGGGAAGGTGCAAACGCAA
CAGTAGGTAATTTATCGTCTGCAGCTACATCAAAAGCCCAAGAGATAAGTAATCTTTAG

Domains

Predicted by InterproScan.

Class III signal peptide (Class_IIIsignal)

(10-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  MMJJ_RS05685 Methanococcus maripaludis strain DSM 2067

65.278

100

0.653
  epdE Methanococcus maripaludis strain DSM 2067

51.429

97.222

0.5

Multiple sequence alignment