Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   AD178_RS02815 Genome accession   NZ_OX244288
Coordinates   543888..544619 (+) Length   243 a.a.
NCBI ID   WP_000889917.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PT8105 isolate 2RLC4     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 538888..549619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AD178_RS02790 (SAMEA1463109_00559) - 540496..540852 (+) 357 WP_000114422.1 hypothetical protein -
  AD178_RS02795 (SAMEA1463109_00560) dnaJ 541254..542390 (+) 1137 WP_001066291.1 molecular chaperone DnaJ -
  AD178_RS02800 (SAMEA1463109_00561) - 542712..542951 (-) 240 WP_001813906.1 hypothetical protein -
  AD178_RS02805 (SAMEA1463109_00562) - 543113..543400 (-) 288 WP_000777760.1 hypothetical protein -
  AD178_RS02810 (SAMEA1463109_00563) - 543410..543820 (-) 411 WP_001278301.1 HIT family protein -
  AD178_RS02815 (SAMEA1463109_00564) pptA 543888..544619 (+) 732 WP_000889917.1 ABC transporter ATP-binding protein Regulator
  AD178_RS02820 (SAMEA1463109_00565) - 544616..545665 (+) 1050 WP_000653752.1 ABC transporter permease -
  AD178_RS02825 (SAMEA1463109_00566) - 545726..546055 (-) 330 WP_000132576.1 hypothetical protein -
  AD178_RS02830 (SAMEA1463109_00567) - 546331..546669 (+) 339 WP_000682121.1 LytTR family DNA-binding domain-containing protein -
  AD178_RS02835 (SAMEA1463109_00568) comE/blpR 546674..547411 (+) 738 WP_001219145.1 response regulator transcription factor Regulator
  AD178_RS02840 (SAMEA1463109_00569) - 547425..548765 (+) 1341 WP_001017620.1 sensor histidine kinase -
  AD178_RS02845 (SAMEA1463109_00570) blpC 548807..548962 (-) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27086.62 Da        Isoelectric Point: 4.7792

>NTDB_id=1154308 AD178_RS02815 WP_000889917.1 543888..544619(+) (pptA) [Streptococcus pneumoniae strain PT8105 isolate 2RLC4]
MLEIKNLTGGYVHVPVLKDVFFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1154308 AD178_RS02815 WP_000889917.1 543888..544619(+) (pptA) [Streptococcus pneumoniae strain PT8105 isolate 2RLC4]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTTCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAAAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment