Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BAMY6614_RS17865 Genome accession   NZ_CP006960
Coordinates   3728063..3728707 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens UMAF6614     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3723063..3733707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6614_RS17830 (BAMY6614_18860) - 3724248..3724679 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  BAMY6614_RS17835 (BAMY6614_18865) - 3724679..3725020 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  BAMY6614_RS17840 (BAMY6614_18870) - 3725013..3726494 (+) 1482 WP_061862530.1 Na+/H+ antiporter subunit D -
  BAMY6614_RS17845 (BAMY6614_18875) - 3726500..3726976 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  BAMY6614_RS17850 (BAMY6614_18880) - 3726976..3727260 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  BAMY6614_RS17855 (BAMY6614_18885) mnhG 3727244..3727618 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  BAMY6614_RS17860 (BAMY6614_18890) - 3727658..3728041 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  BAMY6614_RS17865 (BAMY6614_18895) comA 3728063..3728707 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  BAMY6614_RS17870 (BAMY6614_18900) comP 3728788..3731097 (-) 2310 WP_061862531.1 sensor histidine kinase Regulator
  BAMY6614_RS17875 (BAMY6614_18905) - 3731117..3731293 (-) 177 WP_007408675.1 competence pheromone ComX -
  BAMY6614_RS17880 (BAMY6614_18910) comQ 3731293..3732231 (-) 939 WP_269465507.1 polyprenyl synthetase family protein Regulator
  BAMY6614_RS17885 (BAMY6614_18915) degQ 3732362..3732502 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  BAMY6614_RS17890 (BAMY6614_18920) - 3732968..3733309 (+) 342 WP_061862532.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=115356 BAMY6614_RS17865 WP_003152052.1 3728063..3728707(-) (comA) [Bacillus amyloliquefaciens UMAF6614]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=115356 BAMY6614_RS17865 WP_003152052.1 3728063..3728707(-) (comA) [Bacillus amyloliquefaciens UMAF6614]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGACGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment