Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RG27_RS07670 Genome accession   NZ_CP010121
Coordinates   1491797..1492534 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain C4     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1486797..1497534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG27_RS07640 (RG27_07250) yfiL 1486955..1487320 (-) 366 WP_001314943.1 DUF2799 domain-containing protein -
  RG27_RS07645 (RG27_07255) aroF 1487530..1488600 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  RG27_RS07650 (RG27_07260) tyrA 1488611..1489732 (+) 1122 WP_000225220.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  RG27_RS07655 (RG27_07265) pheA 1489775..1490935 (-) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  RG27_RS26165 pheL 1491035..1491082 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  RG27_RS07660 (RG27_07270) raiA 1491186..1491527 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  RG27_RS07670 (RG27_07280) comL 1491797..1492534 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  RG27_RS07675 (RG27_07285) rluD 1492669..1493649 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RG27_RS07680 (RG27_07290) yfiH 1493646..1494377 (+) 732 WP_000040155.1 purine nucleoside phosphorylase YfiH -
  RG27_RS07685 (RG27_07295) clpC 1494507..1497080 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=115353 RG27_RS07670 WP_000197686.1 1491797..1492534(-) (comL) [Escherichia coli strain C4]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=115353 RG27_RS07670 WP_000197686.1 1491797..1492534(-) (comL) [Escherichia coli strain C4]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAAATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment