Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   NB068_RS02295 Genome accession   NZ_OW969598
Coordinates   468394..470139 (+) Length   581 a.a.
NCBI ID   WP_250313919.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q6792     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 463394..475139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB068_RS02270 - 463608..465146 (+) 1539 WP_250313915.1 SurA N-terminal domain-containing protein -
  NB068_RS02275 recR 465215..465832 (+) 618 WP_172764818.1 recombination mediator RecR -
  NB068_RS02280 - 465888..466166 (-) 279 WP_250313916.1 hypothetical protein -
  NB068_RS02285 - 466392..467639 (+) 1248 WP_250313917.1 lipoprotein-releasing ABC transporter permease subunit -
  NB068_RS02290 lolD 467632..468327 (+) 696 WP_250313918.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  NB068_RS02295 recD 468394..470139 (+) 1746 WP_250313919.1 exodeoxyribonuclease V subunit alpha Machinery gene
  NB068_RS02300 - 470219..471322 (-) 1104 WP_250313920.1 class I SAM-dependent methyltransferase -
  NB068_RS02305 lon 471539..474001 (+) 2463 WP_250313921.1 endopeptidase La -
  NB068_RS02310 - 474183..474452 (+) 270 WP_118792585.1 HU family DNA-binding protein -
  NB068_RS02315 - 474511..474945 (-) 435 WP_250313922.1 hypothetical protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 63135.76 Da        Isoelectric Point: 6.1633

>NTDB_id=1153526 NB068_RS02295 WP_250313919.1 468394..470139(+) (recD) [Neisseria sp. Marseille-Q6792]
MERQTDEFAQAAAQAAIRFLERYAGSGSEVLANCTERLFQALQNGHSFIRLSSGEAGALPALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAVEIKRLAAAGTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDAPETVRRHLLKLEGQTVHRLLKLRPPKMQAAFNPVYPLPFDIL
VIDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFSDELEHSECRLNAQVERLYRTHKAYWQAVDEGNIESAYAGI
SDIVVLAAWRQDAEDFNEAYCSHVRRKRNIPEHQAYFAGEPIMIRQNDYALELFNGDVGLIMDDVQRPGSLSAYFPDTDG
FKKVAVSCLPDFEPAFAMTVHKSQGSEYREVWLLPPSAAPSNEEDDALSGLSRELLYTAITRAKEKFVFFGGEETFRQAA
ATVKVRQTALGNMLKRVFSQG

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=1153526 NB068_RS02295 WP_250313919.1 468394..470139(+) (recD) [Neisseria sp. Marseille-Q6792]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCTGCACAGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCAGG
CAGCGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAGAACGGTCATTCGTTTATCCGTTTGAGCAGTG
GCGAGGCTGGCGCGCTGCCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCGGTCGAGATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCACGGCAGAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGACAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGTCTTTTATGGTGATTACCGGCGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGACCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGCCTGCTGAAACTGCGCCCGCCTAAAATGCAGGCGGCGTTCAACCCTGTTTACCCGCTGCCGTTTGACATATTG
GTTATCGATGAAGCCTCTATGCTGGATACGGCATTGATGTTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGGGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCACAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAGGGGGCGTGGGCATTGTTTGACCGGTTTTCGGACGAACTGGAACATTCGGAATGCCGTCTGAACGCTCAGG
TCGAAAGGTTGTACCGGACTCACAAAGCCTATTGGCAGGCGGTAGACGAAGGCAACATCGAATCCGCCTATGCGGGCATC
TCGGATATCGTCGTCCTCGCGGCTTGGCGGCAGGATGCGGAAGATTTCAACGAAGCTTATTGCAGCCATGTGCGCCGTAA
AAGGAACATACCCGAACATCAGGCCTATTTCGCCGGAGAGCCGATTATGATCAGGCAAAACGACTACGCGCTTGAACTGT
TCAACGGAGACGTCGGACTGATTATGGATGACGTCCAAAGGCCGGGCAGCCTGTCCGCCTATTTTCCCGATACGGACGGG
TTTAAAAAGGTTGCAGTCAGCTGCCTTCCGGATTTTGAACCCGCTTTCGCCATGACCGTCCATAAAAGTCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCCTCTGCCGCACCTTCGAACGAAGAGGATGATGCGCTTTCCGGCTTGAGCAGGG
AGCTGCTTTACACCGCCATTACCAGGGCAAAGGAAAAATTCGTATTCTTCGGCGGGGAAGAAACCTTCCGTCAAGCGGCA
GCTACTGTCAAAGTCCGTCAGACGGCATTGGGCAATATGCTCAAACGGGTATTTTCACAAGGATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)

AAA domain (AAA_30)

(125-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

90.862

99.828

0.907

Multiple sequence alignment