Detailed information    

insolico Bioinformatically predicted

Overview


Name   tpc   Type   Machinery gene
Locus tag   NB068_RS00990 Genome accession   NZ_OW969598
Coordinates   187716..188783 (-) Length   355 a.a.
NCBI ID   WP_250313740.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q6792     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context


Location: 182716..193783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB068_RS00970 - 184198..184824 (-) 627 WP_250313737.1 phosphoribosylanthranilate isomerase -
  NB068_RS00975 greB 184883..185374 (-) 492 WP_002236813.1 transcription elongation factor GreB -
  NB068_RS00980 purF 185474..187018 (-) 1545 WP_250313738.1 amidophosphoribosyltransferase -
  NB068_RS00985 - 187226..187723 (-) 498 WP_250313739.1 CvpA family protein -
  NB068_RS00990 tpc 187716..188783 (-) 1068 WP_250313740.1 cell division protein FtsN Machinery gene
  NB068_RS00995 folC 188796..190070 (-) 1275 WP_250313741.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  NB068_RS01000 - 190102..190548 (-) 447 WP_036474978.1 protein YgfX -
  NB068_RS01005 - 190553..190912 (-) 360 WP_042508243.1 hypothetical protein -
  NB068_RS01010 - 190981..191709 (-) 729 WP_002240396.1 amino acid ABC transporter ATP-binding protein -
  NB068_RS01015 - 191751..192206 (-) 456 WP_250313742.1 hypothetical protein -
  NB068_RS01020 - 192317..192562 (-) 246 Protein_202 GTP pyrophosphokinase -
  NB068_RS01025 rsmA 192537..193316 (-) 780 WP_250313744.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence


Protein


Download         Length: 355 a.a.        Molecular weight: 38040.39 Da        Isoelectric Point: 9.4920

>NTDB_id=1153521 NB068_RS00990 WP_250313740.1 187716..188783(-) (tpc) [Neisseria sp. Marseille-Q6792]
MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCLLLAAALSSDPAENPPAAPTDETGSMENQAASTVQTPTLKSASEG
VEPAADKPQDLASEEQAPAADNGISEPEDVGAPLVIINDRLDDSNIKGLESSAKPKQEEAAEKPQQAETAKTAPKQAKQR
AAEKVPTTADSTDTVAVEKPKRTAETKPQKAERTAEAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKADK
AEGKKTAEKDHSDGKKHETAQKSDKADKTKTAEKEKSEKSGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNG
KVYRVKSSNYKNARDAERDLNKLRVHGIAGQVTNE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1153521 NB068_RS00990 WP_250313740.1 187716..188783(-) (tpc) [Neisseria sp. Marseille-Q6792]
ATGTCCGAAAACAAACAAAACGAAGTCCTGAGCGGTTACGAACAACTCAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGCTGCCTGGTTGCCGCCTCCTGCCTGCTGCTGGCGGCCGCCCTCAGTTCCGATCCTGCCGAAAATCCCCCTGCCGCAC
CGACTGACGAAACAGGCAGCATGGAAAACCAAGCGGCAAGCACGGTACAAACCCCGACCTTAAAATCCGCCTCAGAAGGT
GTTGAACCCGCCGCCGACAAACCTCAAGACCTGGCCAGTGAAGAACAAGCACCTGCCGCCGACAACGGAATCAGCGAACC
TGAAGACGTAGGCGCACCATTGGTCATCATCAACGACCGACTCGACGACAGCAATATCAAAGGCTTGGAGTCATCCGCAA
AACCGAAACAGGAAGAAGCTGCCGAAAAACCGCAGCAGGCAGAAACTGCCAAAACCGCACCGAAGCAGGCAAAACAACGC
GCTGCCGAAAAAGTGCCGACAACTGCCGACAGTACGGATACGGTAGCGGTTGAAAAACCGAAACGCACTGCCGAAACAAA
ACCGCAAAAAGCAGAACGCACTGCCGAAGCCAAGCCCAAAGCCAAAGAAACCAAAACCGCCGAAAAAGTTGCCGACAAAC
CGAAAACTGCCGCCGAAAAAACCAAACCGGATACGGCAAAATCCGACAGCGCGGTAAAAGAAGCGAAAAAAGCCGACAAG
GCTGAAGGCAAAAAAACAGCCGAAAAAGACCATTCGGACGGCAAAAAACACGAAACGGCACAAAAAAGCGACAAAGCGGA
CAAGACCAAAACCGCCGAAAAAGAAAAATCCGAAAAATCCGGTAAAAAAGCCGCCATTCAGGCAGGTTATGCCGAAAAAG
AACGCGCTTTGAGCCTCCAGCGCAAAATGAAAGCGGCGGGTATCGATTCGACCATTACCGAAATCATGACCGACAACGGC
AAGGTTTACCGCGTCAAATCAAGCAACTATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAATTGCGCGTACACGG
CATCGCCGGTCAGGTAACGAATGAATAG

Domains


Predicted by InterproScan.

(282-353)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

85.634

100

0.856


Multiple sequence alignment