Detailed information NTG1152352

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: OC536_RS11365
• Genome accession: NZ_OW443150
• Coordinates: 2513987..2517376 (+)
• Length: 1129 a.a.
• NCBI ID: WP_032477235.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI
• Function: chitin sensor (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	2517462..2518816	2513987..2517376	flank	86

Gene organization within MGE regions

Location: 2513987..2518816

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OC536_RS11365 (CNRVC190247_02289)	chiS	2513987..2517376 (+)	3390	WP_032477235.1	two-component system sensor histidine kinase ChiS	Regulator
OC536_RS11370	-	2517462..2518816 (+)	1355	WP_262102092.1	IS3 family transposase	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127733.85 Da
• Isoelectric Point: 6.6491

>NTDB_id=1152352 OC536_RS11365 WP_032477235.1 2513987..2517376(+) (chiS) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
MFRFYRKQKFKRLQNTLMAAFLALSIIPLTITALFFLHSHSKDLEQQSTSYLVSVRDNKQQQVIDYMMAKESEVMGFVRS
ELAYASGGRFYGLVNAFQRLDVSIEAAREHAQQRYITGSGDQIKTSVLPQSSSYVGSERYRLLHKRYHWAYLELLKRSDF
DDILLVDIDGNVVYSIYKYDNFGTNLLTGKYQDTNLGHTFKRLEQTVNEQRKTNEDFTPVVISDFVQEDGKQYAWLGAPI
IQQGYLHSYAMFRLPSNAITKLIAEGSSNPSMQTILVGQDHRSRTLTSAEIAVEKSKAVVDLALSGKRAVGTYTNTDSEQ
IIAAYAPINLKNIHWALVVELPEKEAFARVRQLEKLFVFAMLTAIVLVVIASHYLSNFITSPLLKLTWAAERVSAGDLDE
AMINTERKDEIGRLAVSFERMQRSIREKISLIKSQNKELESNLLIIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIG
IAEALISGANGPISAAHKYQLDIIISSGQRLATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRI
INQVSEQPVWVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATYIDDKVRVQVVDTGQGIPAEQLEHIFEPLIQAGHDAS
RYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPLASEEEITQARLTELPHFQAPEVLDTELSEQSNLPENEH
GPLLLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVCEKLRQTYDHAELPIIM
LTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLTASKAELRRIENAQLQKELKHRAMVEASLLETQGRLLEQLE
SAPEAILCVKEGNKVRFANEAAARLFRRTPEQLKRSNAEELIAPKFLNIEQEHYCGNIDVYVDDVRQHLSADVLRLPQGS
GLQAMYIFNVGGSVNAARIHNLETAVEALSSYAFEGDKDKLQKLKELGGEFTRLADKASGEYQSKQDLMRAVLVEAMTSA
LNYWERVSGQSKFTFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNSLDYILEHCKEAGPERTHIEMQRD
KLQKLLTSE

Nucleotide

• Length: 3390 bp

>NTDB_id=1152352 OC536_RS11365 WP_032477235.1 2513987..2517376(+) (chiS) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
ATGTTTAGGTTCTATCGAAAACAAAAATTCAAACGCCTGCAAAATACCTTGATGGCTGCGTTTTTGGCCCTCAGCATTAT
TCCTTTGACCATTACTGCGTTGTTTTTCCTACATTCACACAGTAAAGATCTGGAGCAGCAGAGCACCTCTTACCTCGTTT
CTGTTCGGGATAATAAACAGCAACAGGTCATCGACTACATGATGGCCAAAGAGTCGGAAGTGATGGGTTTTGTTCGCTCC
GAGCTGGCTTATGCCAGTGGCGGGCGTTTTTATGGTCTGGTGAATGCTTTCCAGCGTTTAGACGTCAGTATTGAAGCGGC
TCGTGAACATGCTCAGCAGCGCTATATCACCGGATCGGGTGACCAAATAAAAACCTCGGTGCTCCCCCAATCAAGCAGCT
ACGTGGGCAGTGAACGCTATCGACTGCTGCATAAACGCTACCACTGGGCTTACTTAGAACTACTGAAACGGTCGGACTTT
GATGACATTTTATTGGTCGATATTGATGGCAACGTCGTTTATTCGATTTATAAATACGACAATTTTGGCACCAACTTATT
AACGGGCAAATACCAAGACACCAATCTAGGCCATACCTTCAAGCGTTTAGAACAAACGGTCAATGAACAGCGCAAAACCA
ACGAAGATTTCACCCCTGTCGTGATTTCTGATTTCGTGCAAGAGGATGGCAAACAATACGCTTGGCTTGGCGCACCGATT
ATTCAGCAAGGCTACTTGCATAGTTACGCGATGTTCCGCTTACCAAGCAATGCGATCACCAAACTCATCGCAGAAGGCAG
TAGCAATCCTTCGATGCAAACCATTCTGGTGGGACAAGATCACCGCTCAAGAACCTTAACTTCCGCCGAAATTGCGGTTG
AAAAAAGTAAAGCTGTGGTCGATTTAGCCTTATCGGGCAAACGCGCCGTAGGCACTTACACCAATACCGATAGTGAACAG
ATCATCGCGGCCTACGCACCGATCAATTTGAAAAATATCCATTGGGCTCTGGTGGTTGAACTGCCAGAGAAAGAAGCGTT
TGCTCGCGTTCGTCAGTTAGAAAAACTGTTTGTTTTTGCGATGTTGACGGCCATCGTCTTAGTGGTCATCGCCTCGCATT
ACCTTTCCAATTTCATTACCTCACCGCTTTTGAAGCTGACATGGGCAGCCGAACGTGTTTCGGCAGGCGATCTTGATGAA
GCCATGATCAATACCGAACGCAAAGATGAAATTGGCCGCTTGGCGGTCAGTTTTGAGCGTATGCAGCGTTCCATTCGCGA
AAAAATATCGCTGATCAAATCGCAAAATAAAGAGTTAGAGAGCAACTTACTGATCATTCGTAAGCAAAACGATGAGTTAC
AGCTAGCGAATAAGCTAAAAGATGAGTTCCTCGCGACCACATCACATGAATTACGCACCCCATTGCATGGCATGATTGGT
ATTGCCGAAGCCCTGATCTCGGGGGCAAATGGCCCGATTTCAGCAGCGCACAAGTATCAACTCGACATCATTATCAGCAG
TGGGCAACGCTTGGCGACTCTGGTTGATGATCTACTCGATTACCACAAAATGCGCTATGGCGCGCTGGATATTCAAAGGT
GTGCCGTCGATTTATCGAGCGCTACGCGCTTAGTCTTGGAGCTTTCTCACCATTTACTTGGCAAGAAAACGCTGCGCATT
ATTAATCAAGTCTCAGAACAACCGGTCTGGGTTTCTGCGGATCCTCAACGCTTAGAGCAAGTCCTGTATAACTTGATCGG
CAATGCTATTAAGTACACTTCCGAAGGCAAAATTGTTATCTCCGCAACCTATATTGACGATAAAGTGCGCGTGCAGGTCG
TGGATACAGGTCAAGGGATTCCGGCAGAACAACTGGAGCACATCTTTGAGCCATTGATTCAAGCGGGCCATGATGCGAGT
CGCTATCGCCAAGGCGCAGGACTCGGGCTTTCCATCAGTCGTCAGTTAATCGAATTGATGCACGGCACTCTCTACGTAAG
TAGTCAGCCGATGGTTGGCACTACCTTTAGCTTCACGCTGCCTCTGGCGAGCGAAGAAGAGATTACTCAAGCGCGCTTGA
CTGAGCTCCCCCACTTCCAAGCACCGGAAGTGTTGGATACTGAACTGTCCGAGCAAAGCAACTTACCCGAAAATGAACAT
GGCCCACTTCTGTTGGTCGCCGATGATGAACCAGTCAACCTGCGTGTGCTGGACAGCTTTTTACGTCTTGAAGGTTATCG
CGTACATACCGCGCAAGATGGCCATCAAGTACTTGAAGCCATTAAACGTGAAAAACCTGAATTGGTGTTACTCGACATCA
TGATGCCAGGCATGAGCGGTTATCAAGTGTGTGAAAAACTTCGACAAACTTACGACCACGCTGAACTGCCTATTATTATG
CTGACGGCTCTCAACCAGTCTGATGACCGGGTACGAGGGTTTGAAGCTGGAGCCAATGACTACTTATCCAAACCATTCAA
CAAACAAGAGCTGGCCGCACGCATTGTCGCTCACCTCACGGCGAGCAAAGCCGAACTGCGCCGAATTGAGAATGCCCAAC
TGCAAAAAGAGTTGAAGCATCGCGCTATGGTAGAAGCGAGCCTATTGGAAACCCAAGGCCGATTATTGGAACAGTTAGAA
TCTGCACCAGAAGCGATTTTGTGCGTCAAAGAGGGCAATAAAGTACGTTTTGCTAACGAAGCAGCAGCACGTTTATTTAG
ACGTACCCCTGAGCAGCTCAAACGCTCCAACGCCGAAGAACTGATTGCTCCTAAATTCTTGAATATTGAGCAAGAGCATT
ACTGCGGCAATATTGATGTTTACGTCGATGATGTGCGCCAGCACCTCTCTGCCGATGTCCTTCGCTTGCCGCAAGGTTCT
GGCTTACAAGCGATGTACATTTTTAATGTCGGCGGCAGCGTCAATGCCGCGCGGATTCATAACCTCGAAACCGCGGTAGA
AGCTCTGTCTAGCTATGCCTTCGAAGGCGATAAAGACAAGCTGCAAAAACTCAAGGAACTGGGTGGTGAGTTTACTCGTC
TTGCAGATAAAGCCTCGGGCGAGTATCAATCGAAACAAGATTTGATGCGTGCCGTGTTAGTCGAAGCCATGACCAGTGCC
TTGAACTATTGGGAACGAGTCTCAGGACAAAGCAAGTTCACGTTTGCCGAACAAAGTGGATTATGGCGCGTTTATCTTGA
CCGCAGCACCCTACAAACTCGTACCCTAGACAAATACCTACGAATTGAGACACTGCCTAAAACACCGCGTTGGCGAACTG
TACTGAACTCGCTCGACTATATTCTTGAGCATTGCAAAGAAGCAGGCCCTGAACGCACTCACATCGAAATGCAGCGCGAT
AAATTGCAAAAACTCCTGACCAGTGAGTAA

Domains

Predicted by InterproScan.

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Response regulator receiver domain (Response_reg) (725-835)

• PAS domain (PAS_8) (879-913)

• HAMP domain (HAMP) (375-427)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	99.646	100	0.996