Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OC536_RS09305 Genome accession   NZ_OW443150
Coordinates   2052164..2053531 (-) Length   455 a.a.
NCBI ID   WP_172779982.1    Uniprot ID   -
Organism   Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2047164..2058531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC536_RS09270 (CNRVC190247_01867) moaE 2047887..2048339 (-) 453 WP_001914666.1 molybdopterin synthase catalytic subunit MoaE -
  OC536_RS09275 (CNRVC190247_01868) moaD 2048341..2048586 (-) 246 WP_000598589.1 molybdopterin synthase sulfur carrier subunit -
  OC536_RS09280 (CNRVC190247_01869) moaC 2048583..2049062 (-) 480 WP_000080907.1 cyclic pyranopterin monophosphate synthase MoaC -
  OC536_RS09285 (CNRVC190247_01870) moaB 2049073..2049585 (-) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  OC536_RS09290 (CNRVC190247_01871) moaA 2049645..2050634 (-) 990 WP_032476185.1 GTP 3',8-cyclase MoaA -
  OC536_RS09295 (CNRVC190247_01872) - 2050940..2051830 (+) 891 WP_032476184.1 YvcK family protein -
  OC536_RS09300 (CNRVC190247_01873) luxU 2051819..2052160 (-) 342 WP_032476183.1 quorum-sensing phosphorelay protein LuxU -
  OC536_RS09305 (CNRVC190247_01874) luxO 2052164..2053531 (-) 1368 WP_172779982.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OC536_RS09310 (CNRVC190247_01875) uvrB 2053961..2055991 (-) 2031 WP_000029983.1 excinuclease ABC subunit UvrB -
  OC536_RS09320 (CNRVC190247_01877) rsxA 2056873..2057454 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  OC536_RS09325 (CNRVC190247_01878) rsxB 2057454..2058041 (+) 588 WP_000104488.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50840.07 Da        Isoelectric Point: 5.5755

>NTDB_id=1152349 OC536_RS09305 WP_172779982.1 2052164..2053531(-) (luxO) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLNKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1152349 OC536_RS09305 WP_172779982.1 2052164..2053531(-) (luxO) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
ATGGTAGAAGACACGGCGTCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGCCGTCGCGAGCCTGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCTCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGAACAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
TGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAAAACCAAAACTATCAAGGATTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACCGGTAAAGAAGTGTGCGCGGAAGCGATTCATGCCGCGAGCAAGCGTGGAGATAAGCCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTTAAAGGGGCTTTTACCGGAGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTACTGCGCTTTATTCAGACAGGGACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCAACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGACGTTTTCGTGAAGATCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCCCCATTGCGTGCGCGCGGTGATGATGTGATCGAGATTGCTTACTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCGTCAATACGAGTGGCCGGG
CAACGTGCGTCAATTGCAAAACGTTTTGCGCAACGTGGTCGTGCTCAATGAAGGTCGTGAAATCACCCTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCTGTGCATGAG
ATTTTTCCGCTGTGGATGACCGAAAAACAAGCCATTGAACAAGCCATCGAAGCGTGTGATGGTAACATTCCTCGTGCCGC
GACCTATCTGGATGTCAGCCCATCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

99.78

100

0.998
  pilR Pseudomonas aeruginosa PAK

38.274

99.341

0.38

Multiple sequence alignment