Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   OC536_RS04240 Genome accession   NZ_OW443150
Coordinates   906639..909983 (+) Length   1114 a.a.
NCBI ID   WP_032476418.1    Uniprot ID   -
Organism   Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 901639..914983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC536_RS04215 (CNRVC190247_00846) sucC 901760..902926 (+) 1167 WP_001048578.1 ADP-forming succinate--CoA ligase subunit beta -
  OC536_RS04220 (CNRVC190247_00847) sucD 902926..903798 (+) 873 WP_000025475.1 succinate--CoA ligase subunit alpha -
  OC536_RS04225 (CNRVC190247_00848) znuB 903905..904687 (-) 783 WP_000571527.1 zinc ABC transporter permease subunit ZnuB -
  OC536_RS04230 (CNRVC190247_00849) znuC 904680..905468 (-) 789 WP_000996146.1 zinc ABC transporter ATP-binding protein ZnuC -
  OC536_RS04235 (CNRVC190247_00850) znuA 905552..906436 (+) 885 WP_032471187.1 zinc ABC transporter substrate-binding protein ZnuA -
  OC536_RS04240 (CNRVC190247_00851) tfoS 906639..909983 (+) 3345 WP_032476418.1 AraC family transcriptional regulator Regulator
  OC536_RS04245 (CNRVC190247_00852) - 910756..910986 (+) 231 WP_000777870.1 ferrous iron transport protein A -
  OC536_RS04250 (CNRVC190247_00853) feoB 910983..913259 (+) 2277 WP_002032663.1 Fe(2+) transporter permease subunit FeoB -
  OC536_RS04255 (CNRVC190247_00854) - 913256..913486 (+) 231 WP_000602537.1 FeoC-like transcriptional regulator -
  OC536_RS04260 (CNRVC190247_00855) - 913748..914176 (-) 429 WP_000929906.1 HIT domain-containing protein -

Sequence

Protein


Download         Length: 1114 a.a.        Molecular weight: 126475.04 Da        Isoelectric Point: 6.7773

>NTDB_id=1152339 OC536_RS04240 WP_032476418.1 906639..909983(+) (tfoS) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
MFRTLLYGCLLNILIPSLVLALDKSMSIFYPLPIQEQGKVIVAQNLYLGSDGGIWVHDVHGKVMYFDGQNVLPRRGSVLP
QLSSHIVYANSAFWAFEQHELFRTYPGGERELMLSLTPGTQIIQMGASNGMIWMVDGENFYSYEIRSGRVESLSLHELYQ
LNSASKVVINDAQFLVSKWALATNVGVYLSDEQGFAHVKNSGKHFIQKLYFSHKRRELLVGSKRGALVIDIENKRPPLDR
IGSSHVLSIAETEKEYWIGTEDGLFVYSFITGKIVQLESNNQDGYALLGKKIYAMVNDFQGGMWIGTDKGIFYYSLFGQQ
FTRYPAQALSNDGSKTPIGKIAALNSDGDYLAITAQGLYNFNFSDELRKHLIYPGKVNDFVIEQEHIWIATEKGLVRYNL
SRRSIDTPNLPLPLLQTAIQHLSLDRDGNLWGASDYQIWSYSLSEKNYRDYGSEWMVKAFSPSRITLLAAVKDGIVIGTE
HGAYSLLEKQIRFDFSSHRYGEILQVAEDSSGHIWLVGSYGVFQWRKDQPEAVTVELIEENIQPLCIAESKQGMWLISTK
GISYYRNQELTKHFGAPYGLISNEFLSASCAVGEEQDNSSLIIGSQFGVVKTNTEELAVSNLPNIQVTFSQVSVNHTTKL
LGYRMSEPLKIAYGDSISFQFGALPSSRSQSLEYKLNDEQQWQRFDWALLNFDQLLPGKYRLKVRSANPTQRYRTEALFD
FEVLQPWYMTSIALVGYVLSVLGLLALALWWRTRMILAANRKLKAQVELKTSQLRHQSKIVLSNNHQLRKQLQLHHTILG
NVLDNIDASLRHLSSYAKVRAWSEFEAPFNKVKQELAQLHFMHRGDEDESKYHDLHLLIESALKSWQEEYSKALIKLTYS
GEPRFVEVRQFNLDVLFNAVLTDAIKRLYKHQELTIQLEVRNAQAVIVFSDFGAPIQNIDKTMVTLSGSSYPLEELVTRS
GGVLHVLALKERNVIELAWPLATLPELETIHKPEEGEQAAKVGIDEVEKEWLSKVEKLIELHYSDPNFTTSTAAQALYVS
ERSLQRRFKAATGKTFKESLNEVRLEKACQSLLSGAKIAQVAFDCGFNDPSYFSQRFKHHFGLSPSQFIEDQEN

Nucleotide


Download         Length: 3345 bp        

>NTDB_id=1152339 OC536_RS04240 WP_032476418.1 906639..909983(+) (tfoS) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
GTGTTTCGCACATTGTTGTATGGCTGCTTGCTCAATATCCTGATCCCATCCTTGGTATTGGCATTAGATAAATCTATGTC
TATTTTCTATCCTTTGCCCATTCAAGAGCAGGGGAAGGTTATTGTTGCGCAAAATCTCTACCTCGGTAGTGATGGGGGGA
TTTGGGTACATGATGTTCATGGCAAAGTGATGTACTTTGATGGACAAAACGTCTTGCCTCGTCGTGGTTCTGTTCTGCCG
CAGTTGTCCAGTCATATTGTTTATGCGAACAGTGCATTTTGGGCTTTTGAGCAACACGAGTTGTTCAGAACCTATCCCGG
GGGAGAAAGAGAGCTGATGTTGAGCTTAACTCCGGGAACGCAGATTATTCAGATGGGGGCCTCAAATGGCATGATCTGGA
TGGTTGATGGGGAAAACTTCTATAGTTATGAGATCCGAAGTGGCCGCGTCGAATCCCTTTCGTTACATGAACTTTATCAG
CTCAATAGTGCCAGCAAGGTCGTGATTAACGATGCGCAGTTTTTAGTCTCGAAATGGGCTTTAGCGACTAATGTTGGGGT
GTATTTATCTGATGAACAAGGTTTTGCCCATGTAAAAAATTCTGGCAAGCACTTTATCCAAAAGCTCTATTTTTCCCATA
AGCGGCGAGAGCTGTTAGTTGGGTCTAAACGTGGCGCGTTAGTCATTGATATTGAAAATAAACGTCCACCACTGGATAGA
ATTGGTTCCTCCCATGTCCTTTCTATTGCGGAAACCGAGAAAGAGTACTGGATCGGTACAGAAGATGGGCTCTTTGTTTA
CTCTTTTATCACCGGGAAAATCGTGCAACTTGAGAGTAACAACCAAGATGGCTATGCCTTACTGGGCAAGAAAATCTACG
CCATGGTGAATGATTTTCAAGGTGGAATGTGGATAGGAACTGATAAGGGGATTTTTTATTACTCCCTATTTGGTCAGCAG
TTCACTCGGTATCCGGCGCAAGCATTATCTAACGACGGAAGTAAAACACCGATCGGTAAAATAGCCGCTCTTAACTCGGA
TGGAGACTATCTGGCGATAACCGCACAAGGCCTGTATAACTTCAATTTTTCAGATGAGCTACGTAAGCATCTTATCTATC
CAGGCAAAGTAAATGATTTTGTGATTGAGCAAGAACATATCTGGATCGCGACAGAGAAAGGTCTGGTTCGTTACAATCTC
AGTCGCCGTAGTATTGATACGCCCAATTTACCGCTCCCTTTGCTACAAACGGCTATTCAGCATCTGAGCTTAGATAGGGA
CGGTAACTTATGGGGGGCAAGTGATTACCAAATATGGTCATACTCACTCTCTGAAAAAAATTATCGAGATTATGGTTCTG
AATGGATGGTGAAGGCTTTTTCTCCATCACGGATCACTCTGCTTGCCGCAGTAAAAGACGGCATAGTGATTGGGACAGAA
CATGGCGCTTATTCCCTGCTTGAAAAACAGATCCGCTTTGATTTTTCGAGTCATCGTTATGGTGAGATTTTGCAAGTTGC
TGAAGATTCTTCAGGCCACATTTGGCTTGTTGGCTCTTATGGGGTCTTTCAGTGGCGTAAAGATCAGCCCGAAGCTGTCA
CTGTCGAGTTAATTGAAGAGAATATACAGCCTTTGTGTATTGCTGAGTCTAAGCAGGGGATGTGGCTTATCTCCACCAAA
GGGATCAGTTATTACCGTAATCAAGAGCTCACTAAGCATTTTGGGGCTCCTTATGGACTGATCAGTAATGAGTTCTTGTC
TGCATCGTGTGCGGTGGGTGAGGAGCAAGATAACTCATCGTTGATCATAGGATCGCAATTTGGTGTAGTGAAAACCAATA
CAGAAGAATTAGCGGTGTCTAATTTGCCCAATATTCAGGTGACGTTTAGCCAAGTCAGCGTAAATCATACGACCAAGCTT
TTGGGGTATCGTATGTCCGAGCCACTGAAAATTGCTTATGGTGATTCGATCAGCTTTCAGTTTGGCGCTTTACCCTCTTC
ACGCAGCCAATCTTTAGAATACAAACTCAACGATGAACAGCAGTGGCAGCGCTTTGATTGGGCGCTGCTCAATTTTGATC
AACTTTTACCTGGTAAGTATCGTTTGAAAGTCCGTAGCGCCAATCCGACACAGCGATACCGAACTGAGGCCCTGTTTGAT
TTTGAAGTCTTACAGCCTTGGTATATGACCTCCATCGCGCTTGTCGGATATGTGCTGAGCGTGTTGGGGTTATTAGCACT
CGCTTTATGGTGGCGAACAAGAATGATATTGGCAGCTAACCGCAAACTCAAAGCGCAAGTGGAGCTCAAAACCAGTCAGT
TACGTCATCAAAGTAAAATTGTACTGAGCAACAACCACCAACTTCGAAAGCAACTGCAGCTCCACCATACAATTCTTGGT
AACGTTTTAGACAATATTGATGCTTCATTGCGGCACTTATCTTCTTACGCCAAAGTACGAGCATGGAGTGAATTTGAAGC
ACCGTTCAACAAGGTGAAGCAAGAGTTGGCTCAACTGCATTTTATGCATCGCGGCGATGAGGATGAAAGCAAATATCATG
ATTTGCATCTTTTGATTGAGTCTGCATTGAAGAGTTGGCAGGAAGAGTACAGTAAAGCCTTGATTAAGCTAACTTACAGC
GGTGAGCCTCGCTTTGTGGAAGTCCGACAATTCAACCTTGATGTGTTATTTAATGCTGTATTAACGGATGCGATCAAACG
TTTGTATAAGCATCAAGAATTAACCATACAACTTGAAGTGAGAAATGCGCAGGCGGTTATCGTGTTTTCTGATTTTGGTG
CCCCAATCCAAAACATAGACAAAACCATGGTGACGTTATCTGGTAGTAGTTATCCGCTTGAAGAGTTAGTCACTCGTAGT
GGTGGTGTATTGCATGTGCTCGCATTGAAAGAGCGTAATGTGATTGAGTTAGCTTGGCCATTGGCAACCTTACCCGAGTT
AGAAACCATTCATAAACCAGAAGAAGGGGAGCAGGCGGCTAAGGTTGGGATCGATGAGGTGGAGAAAGAGTGGCTAAGCA
AAGTCGAGAAACTGATTGAGCTGCATTATAGCGACCCCAATTTCACCACATCCACTGCAGCGCAGGCGCTTTATGTCTCT
GAACGAAGTTTACAGCGTCGCTTTAAAGCCGCGACAGGAAAAACCTTCAAAGAGTCGTTAAATGAGGTTCGCTTAGAAAA
AGCGTGTCAAAGCTTATTGAGTGGGGCGAAAATCGCACAAGTTGCCTTTGATTGCGGATTTAATGATCCCTCTTATTTCA
GTCAGCGTTTCAAACATCATTTTGGATTATCACCAAGCCAATTCATCGAAGATCAAGAAAACTAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_18)

(1034-1109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

99.551

100

0.996

Multiple sequence alignment