Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RG25_RS24800 Genome accession   NZ_CP010117
Coordinates   4799093..4799830 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain C2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4794093..4804830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG25_RS24770 (RG25_23580) yfiL 4794251..4794616 (-) 366 WP_001314943.1 DUF2799 domain-containing protein -
  RG25_RS24775 (RG25_23585) aroF 4794826..4795896 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  RG25_RS24780 (RG25_23590) tyrA 4795907..4797028 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  RG25_RS24785 (RG25_23595) pheA 4797071..4798231 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  RG25_RS25785 pheL 4798330..4798377 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  RG25_RS24790 (RG25_23600) raiA 4798481..4798822 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  RG25_RS24800 (RG25_23610) comL 4799093..4799830 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  RG25_RS24805 (RG25_23615) rluD 4799965..4800945 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RG25_RS24810 (RG25_23620) yfiH 4800942..4801673 (+) 732 WP_000040149.1 purine nucleoside phosphorylase YfiH -
  RG25_RS24815 (RG25_23625) clpC 4801803..4804376 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=115232 RG25_RS24800 WP_000197686.1 4799093..4799830(-) (comL) [Escherichia coli strain C2]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=115232 RG25_RS24800 WP_000197686.1 4799093..4799830(-) (comL) [Escherichia coli strain C2]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376