Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   QM552_RS09870 Genome accession   NZ_OW011623
Coordinates   2155092..2156486 (+) Length   464 a.a.
NCBI ID   WP_282810144.1    Uniprot ID   -
Organism   Thauera humireducens strain Piv1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2150092..2161486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM552_RS09845 (C4PIVTH_2043) - 2150117..2150800 (-) 684 WP_004258361.1 class II aldolase/adducin family protein -
  QM552_RS09850 (C4PIVTH_2044) mtnA 2150797..2151897 (-) 1101 WP_282810141.1 S-methyl-5-thioribose-1-phosphate isomerase -
  QM552_RS09855 (C4PIVTH_2045) - 2151955..2153112 (-) 1158 WP_282810142.1 pyridoxal phosphate-dependent aminotransferase -
  QM552_RS09860 (C4PIVTH_2046) - 2153277..2153534 (+) 258 WP_282810143.1 PP0621 family protein -
  QM552_RS09865 (C4PIVTH_2047) - 2153500..2155095 (+) 1596 WP_282811642.1 PAS domain-containing sensor histidine kinase -
  QM552_RS09870 (C4PIVTH_2048) pilR 2155092..2156486 (+) 1395 WP_282810144.1 sigma-54 dependent transcriptional regulator Regulator
  QM552_RS09875 (C4PIVTH_2049) - 2156487..2157896 (-) 1410 WP_282810145.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -
  QM552_RS09880 (C4PIVTH_2051) - 2158170..2158799 (+) 630 WP_282810146.1 XrtA/PEP-CTERM system exopolysaccharide export protein -
  QM552_RS09885 (C4PIVTH_2052) - 2158883..2160430 (+) 1548 WP_004258392.1 XrtA system polysaccharide chain length determinant -
  QM552_RS09890 (C4PIVTH_2053) - 2160445..2161398 (+) 954 WP_282810147.1 XrtA-associated tyrosine autokinase -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50868.13 Da        Isoelectric Point: 5.8758

>NTDB_id=1152200 QM552_RS09870 WP_282810144.1 2155092..2156486(+) (pilR) [Thauera humireducens strain Piv1]
MTVNERRNRPDSIDVLVVDDEDDIRELIELSLMRMGLGCDTAGSVQEARALIERRRYRLCLTDMRLPDGDGLELVEFIQA
RQPSTPVAVITAFGSIETAIRALKLGAFDFVTKPVELKRLRELVTHALKLEPSAAVVAPGGRTLIGSSPAFLQLRAQAEK
LARNQAPVFIHGESGTGKEVIARLIHGLGARANGPFVPVNCGAISPELMESEFFGHRKGSFTGAATDKEGLFQAASGGTL
FLDELGELPLAMQVKLLRAIQERAVRPVGAHAEEPVDVRILSASHQDLSRLVADGKFRQDLFFRINVITLRIPPLRERAE
DIPALAEHILTRVAEREGGPPRRLSPAAMTVLQRHDFPGNVRELENLLERACALCEGDEIGPDDIDLQPACFSSATARPD
ATAAEAGSTAGADAVEHDGHDTEVERMRVLKALEDTRWNRSAAARNLGMTLRQLRYRLQKWGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1152200 QM552_RS09870 WP_282810144.1 2155092..2156486(+) (pilR) [Thauera humireducens strain Piv1]
ATGACCGTCAACGAACGCCGCAATCGTCCCGATTCGATCGACGTCCTCGTGGTCGACGACGAGGACGACATCCGCGAACT
GATCGAGCTGTCCCTGATGCGCATGGGGCTGGGCTGTGACACGGCCGGTTCGGTGCAGGAGGCACGTGCGCTGATCGAAC
GTCGTCGCTACCGCCTGTGCCTGACCGACATGCGCCTGCCGGACGGCGACGGGCTCGAACTCGTCGAGTTCATCCAGGCG
CGCCAGCCGAGCACGCCGGTGGCCGTCATCACCGCGTTTGGCAGCATCGAGACCGCCATCCGTGCACTCAAGCTGGGTGC
GTTCGACTTCGTGACCAAGCCGGTCGAGCTCAAGCGCCTGCGGGAGCTCGTCACCCATGCCCTCAAGCTCGAGCCTTCGG
CTGCTGTCGTCGCGCCTGGCGGACGCACGTTGATCGGCAGTTCGCCCGCCTTCCTGCAGCTACGCGCGCAGGCCGAGAAG
CTCGCCCGCAACCAGGCGCCGGTCTTCATCCACGGCGAATCCGGCACCGGCAAGGAGGTCATCGCGCGTCTCATCCATGG
GCTCGGCGCGCGCGCCAACGGCCCCTTCGTGCCGGTGAATTGCGGTGCGATCTCGCCCGAACTGATGGAAAGCGAGTTCT
TCGGCCATCGCAAGGGCAGCTTCACCGGCGCAGCGACCGACAAGGAAGGGCTGTTCCAGGCCGCGAGCGGCGGCACGCTG
TTCCTGGACGAGCTCGGCGAGCTGCCGCTGGCCATGCAGGTCAAGCTGCTGCGGGCAATCCAGGAGCGGGCCGTGCGGCC
CGTGGGTGCCCATGCGGAGGAACCCGTGGACGTGCGCATCCTGTCCGCCTCGCACCAGGACCTTTCCCGGCTCGTGGCCG
ATGGCAAGTTCCGCCAGGATCTCTTCTTCCGCATCAACGTGATCACGCTGCGCATCCCGCCGCTGCGCGAGCGCGCCGAG
GACATCCCTGCGCTGGCCGAGCACATCCTGACCCGGGTCGCCGAGCGCGAAGGCGGCCCGCCGCGCCGGCTTTCCCCAGC
GGCGATGACCGTACTGCAGCGCCATGATTTTCCGGGCAACGTGCGCGAGCTCGAGAACCTGCTCGAGCGCGCCTGCGCGC
TGTGCGAAGGCGACGAGATCGGGCCGGACGACATCGACCTGCAGCCGGCCTGCTTTTCCTCTGCGACCGCCAGGCCCGAC
GCAACCGCAGCCGAAGCTGGCTCCACGGCTGGGGCGGATGCTGTCGAGCATGACGGTCACGACACCGAGGTCGAGCGCAT
GCGGGTGCTCAAGGCGCTGGAGGATACGCGCTGGAACCGTTCGGCGGCGGCGCGCAATCTGGGCATGACCCTGCGCCAGT
TGCGCTACCGCCTGCAGAAGTGGGGCATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(144-310)

Bacterial regulatory protein, Fis family (HTH_8)

(423-461)

Response regulator receiver domain (Response_reg)

(15-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

60.356

96.767

0.584
  pilR Acinetobacter baumannii strain A118

50.759

99.353

0.504

Multiple sequence alignment