Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACBG87_RS00040 Genome accession   NZ_OV915080
Coordinates   9252..9830 (+) Length   192 a.a.
NCBI ID   WP_260369713.1    Uniprot ID   A0AAU9QYB0
Organism   Lactobacillus delbrueckii subsp. delbrueckii strain CIRM-BIA865     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4252..14830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACBG87_RS00025 (LDD865_0005) gyrB 4257..6218 (+) 1962 WP_002879426.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ACBG87_RS00030 (LDD865_0006) gyrA 6231..8702 (+) 2472 WP_369879242.1 DNA gyrase subunit A -
  ACBG87_RS00035 (LDD865_0007) rpsF 8918..9211 (+) 294 WP_003612647.1 30S ribosomal protein S6 -
  ACBG87_RS00040 (LDD865_0008) ssb 9252..9830 (+) 579 WP_260369713.1 single-stranded DNA-binding protein Machinery gene
  ACBG87_RS00045 (LDD865_0009) rpsR 9857..10090 (+) 234 WP_025895705.1 30S ribosomal protein S18 -
  ACBG87_RS00050 (LDD865_0010) - 10231..12252 (+) 2022 WP_025895706.1 DHH family phosphoesterase -
  ACBG87_RS00055 (LDD865_0011) rplI 12275..12730 (+) 456 WP_035185533.1 50S ribosomal protein L9 -
  ACBG87_RS00060 (LDD865_0012) dnaB 12754..14124 (+) 1371 WP_130183309.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 20683.36 Da        Isoelectric Point: 4.5431

>NTDB_id=1152136 ACBG87_RS00040 WP_260369713.1 9252..9830(+) (ssb) [Lactobacillus delbrueckii subsp. delbrueckii strain CIRM-BIA865]
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNGGFGGQGQSQNTGFNTGFGGGSGYANDNAFGSPAQSNGLANAGFN
EDNKKDAGGDTNTNPFDSSDDAINVSNDDLPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1152136 ACBG87_RS00040 WP_260369713.1 9252..9830(+) (ssb) [Lactobacillus delbrueckii subsp. delbrueckii strain CIRM-BIA865]
ATGATCAATAACGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTGGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCTGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGAATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACGGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGAGCGTGAAAGCCGTCAGCAAAACGGCGGATTTGGTGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACTGGATTTG
GCGGCGGCAGCGGCTACGCCAACGACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCTAGCTAATGCCGGATTCAAT
GAAGATAACAAGAAAGATGCCGGCGGAGACACGAACACCAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAA
TGACGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.333

100

0.583
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.396

100

0.474

Multiple sequence alignment