Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MD993_RS09725 Genome accession   NZ_OV648025
Coordinates   2050600..2050995 (-) Length   131 a.a.
NCBI ID   WP_000932697.1    Uniprot ID   A0A7U7PX14
Organism   Staphylococcus argenteus isolate 20S00001-1_long     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2045600..2055995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MD993_RS09700 thiE 2046205..2046846 (-) 642 WP_031787699.1 thiamine phosphate synthase -
  MD993_RS09705 thiM 2046848..2047639 (-) 792 WP_031787700.1 hydroxyethylthiazole kinase -
  MD993_RS09710 thiD 2047623..2048453 (-) 831 WP_031787701.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MD993_RS09715 tenA 2048450..2049136 (-) 687 WP_031787702.1 thiaminase II -
  MD993_RS09720 sceD 2049516..2050208 (-) 693 WP_031787703.1 lytic transglycosylase SceD -
  MD993_RS09725 ssb 2050600..2050995 (-) 396 WP_000932697.1 single-stranded DNA-binding protein Machinery gene
  MD993_RS09730 - 2051189..2051629 (+) 441 WP_000846749.1 YwpF-like family protein -
  MD993_RS09735 fabZ 2051686..2052126 (-) 441 WP_000447680.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MD993_RS09740 murA 2052160..2053425 (-) 1266 WP_000358013.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  MD993_RS09745 - 2053537..2053770 (-) 234 WP_000384521.1 DUF1146 family protein -
  MD993_RS09750 - 2054102..2054506 (-) 405 WP_001094393.1 F0F1 ATP synthase subunit epsilon -
  MD993_RS09755 atpD 2054526..2055938 (-) 1413 WP_000511140.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15016.10 Da        Isoelectric Point: 5.2398

>NTDB_id=1151913 MD993_RS09725 WP_000932697.1 2050600..2050995(-) (ssb) [Staphylococcus argenteus isolate 20S00001-1_long]
MLNKIVIVGRLTKDVQIFEKEERKVATFCVATQRNYKDENGEIVCDYIFCKAFGKLASNIDKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSHNIDNPDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1151913 MD993_RS09725 WP_000932697.1 2050600..2050995(-) (ssb) [Staphylococcus argenteus isolate 20S00001-1_long]
ATGCTAAACAAAATCGTAATAGTTGGAAGACTAACGAAAGATGTACAAATCTTTGAAAAGGAGGAAAGAAAGGTTGCTAC
GTTTTGTGTTGCAACACAACGAAATTATAAAGATGAAAACGGAGAAATCGTTTGTGATTATATTTTTTGCAAAGCATTTG
GCAAGCTAGCGTCAAACATTGATAAGTACACCAATCAAGGTACGCTAGTTGGTATTACAGGTCAAATGAGATCAAGAAAA
TATGATAAAGACGGTCAAACACACTTTGTTACAGAATTATATGTTGAAACTATAAAATTCATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCATAATATAGATAATCCTGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7PX14

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

93.893

100

0.939
  ssb Staphylococcus aureus MW2

93.13

100

0.931

Multiple sequence alignment