Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   MD993_RS07355 Genome accession   NZ_OV648025
Coordinates   1587814..1588515 (-) Length   233 a.a.
NCBI ID   WP_072324129.1    Uniprot ID   -
Organism   Staphylococcus argenteus isolate 20S00001-1_long     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1582814..1593515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MD993_RS07335 rpsT 1583723..1583974 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  MD993_RS07340 holA 1584024..1584998 (-) 975 WP_001282558.1 DNA polymerase III subunit delta -
  MD993_RS07345 comEC 1585055..1587256 (-) 2202 WP_031787280.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MD993_RS07350 - 1587261..1587722 (-) 462 WP_000439693.1 ComE operon protein 2 -
  MD993_RS07355 comEA 1587814..1588515 (-) 702 WP_072324129.1 ComEA family DNA-binding protein Machinery gene
  MD993_RS07360 - 1588555..1589271 (-) 717 WP_031787282.1 class I SAM-dependent methyltransferase -
  MD993_RS07365 rsfS 1589274..1589627 (-) 354 WP_001088023.1 ribosome silencing factor -
  MD993_RS07370 yqeK 1589628..1590212 (-) 585 WP_031787283.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  MD993_RS07375 - 1590202..1590771 (-) 570 WP_000725169.1 nicotinate-nucleotide adenylyltransferase -
  MD993_RS07380 yhbY 1590774..1591064 (-) 291 WP_000955238.1 ribosome assembly RNA-binding protein YhbY -
  MD993_RS07385 aroE 1591069..1591875 (-) 807 WP_031787284.1 shikimate dehydrogenase -
  MD993_RS07390 yqeH 1591888..1592988 (-) 1101 WP_031787285.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26367.06 Da        Isoelectric Point: 9.7027

>NTDB_id=1151903 MD993_RS07355 WP_072324129.1 1587814..1588515(-) (comEA) [Staphylococcus argenteus isolate 20S00001-1_long]
MVLLYQFLLRYKDFFNQWKLYIISAVVLIMLLIGFIFWRQDEHTARDFENKDTALKQNTSENSSLSKLEDVQVKDGDNSK
NKGPVYIDVKGAVKHPNVYKMTSKDRVIDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHTKN
GNTKNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1151903 MD993_RS07355 WP_072324129.1 1587814..1588515(-) (comEA) [Staphylococcus argenteus isolate 20S00001-1_long]
GTGGTTTTGTTGTATCAATTTTTATTACGCTATAAAGATTTTTTCAATCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGTTATTAATAGGTTTTATATTCTGGAGACAAGATGAACATACTGCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAACACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATATCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTACAAAATGACATCTAAGGATAGAGT
AATTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTTATACCTCATAAAGGACAAAAGAACGTTGAACCACAAATTGGAGTAAATAGTGTGCACACAAAAAAT
GGGAACACAAAAAATGGAAACACAAATAATACTAAAGTAAATCTAAATACGGCATCTGTATCTGAATTGATGTCTGTTCC
TGGAGTAGGTCAAGCTAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGA
AAAAAGTAAAAGGTTTTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(169-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

91.81

99.571

0.914
  comEA Staphylococcus aureus N315

91.81

99.571

0.914

Multiple sequence alignment