Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   LQ983_RS08130 Genome accession   NZ_OV100759
Coordinates   1685760..1686281 (+) Length   173 a.a.
NCBI ID   WP_230622294.1    Uniprot ID   -
Organism   Aggregatibacter sp. Marseille-P9115     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1680760..1691281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ983_RS08090 tolQ 1680932..1681621 (+) 690 WP_111305323.1 protein TolQ -
  LQ983_RS08095 tolR 1681707..1682129 (+) 423 WP_006718996.1 colicin uptake protein TolR -
  LQ983_RS08100 tolA 1682147..1683286 (+) 1140 WP_230622292.1 cell envelope integrity protein TolA -
  LQ983_RS08105 tolB 1683320..1684600 (+) 1281 WP_230622293.1 Tol-Pal system beta propeller repeat protein TolB -
  LQ983_RS08110 pal 1684615..1685067 (+) 453 WP_006718991.1 peptidoglycan-associated lipoprotein Pal -
  LQ983_RS08130 comN 1685760..1686281 (+) 522 WP_230622294.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LQ983_RS08135 - 1686268..1687011 (+) 744 WP_370636660.1 hypothetical protein -
  LQ983_RS08140 - 1687008..1687703 (+) 696 WP_230622296.1 DUF2572 family protein -
  LQ983_RS08145 comQ 1687678..1687980 (+) 303 WP_230622297.1 DUF5374 domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19907.07 Da        Isoelectric Point: 8.7387

>NTDB_id=1151832 LQ983_RS08130 WP_230622294.1 1685760..1686281(+) (comN) [Aggregatibacter sp. Marseille-P9115]
MQKGFTLLEMLIALFILSLLLMLALPTWQQSSQQNILQKEQQKLYAFLRQIQARVENSSDIWFLIASRDLSGKRWCLTAQ
IKNHHLCDCLSPRGCPQHVSAHFYYPAFSDTMLISKRYYPLELTRLSGIRNTASTACFVLQANHQRTLFSFFNVGSLKLK
DNQSLSACVNDEE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1151832 LQ983_RS08130 WP_230622294.1 1685760..1686281(+) (comN) [Aggregatibacter sp. Marseille-P9115]
ATGCAAAAAGGCTTCACTTTGCTGGAAATGTTAATCGCACTTTTCATTCTTAGTTTATTGTTGATGCTTGCTTTGCCCAC
ATGGCAGCAATCTTCACAGCAGAATATCTTACAAAAAGAGCAGCAAAAGCTTTATGCGTTTTTACGTCAAATTCAAGCTC
GCGTGGAGAATTCTTCTGATATCTGGTTTCTTATAGCAAGTCGCGATTTGTCAGGAAAACGTTGGTGCTTAACGGCGCAG
ATTAAAAATCATCATCTATGTGACTGTTTATCTCCTCGAGGTTGTCCACAACATGTTTCTGCGCATTTTTATTATCCGGC
TTTCTCGGACACAATGTTGATTAGCAAGCGTTATTATCCTCTGGAACTCACGCGTTTAAGTGGCATTCGTAACACCGCGT
CCACAGCCTGTTTTGTGTTGCAAGCGAATCATCAACGAACCCTCTTTTCGTTTTTTAATGTGGGCAGTTTGAAATTAAAA
GATAACCAATCCTTAAGTGCTTGTGTAAATGATGAAGAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

58.58

97.688

0.572

Multiple sequence alignment