Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   LQ983_RS08145 Genome accession   NZ_OV100759
Coordinates   1687678..1687980 (+) Length   100 a.a.
NCBI ID   WP_230622297.1    Uniprot ID   -
Organism   Aggregatibacter sp. Marseille-P9115     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1682678..1692980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ983_RS08105 tolB 1683320..1684600 (+) 1281 WP_230622293.1 Tol-Pal system beta propeller repeat protein TolB -
  LQ983_RS08110 pal 1684615..1685067 (+) 453 WP_006718991.1 peptidoglycan-associated lipoprotein Pal -
  LQ983_RS08130 comN 1685760..1686281 (+) 522 WP_230622294.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LQ983_RS08135 - 1686268..1687011 (+) 744 WP_370636660.1 hypothetical protein -
  LQ983_RS08140 - 1687008..1687703 (+) 696 WP_230622296.1 DUF2572 family protein -
  LQ983_RS08145 comQ 1687678..1687980 (+) 303 WP_230622297.1 DUF5374 domain-containing protein Machinery gene
  LQ983_RS08150 recC 1688019..1691414 (+) 3396 WP_230622298.1 exodeoxyribonuclease V subunit gamma -
  LQ983_RS08155 rimI 1691417..1691860 (-) 444 WP_230622299.1 ribosomal protein S18-alanine N-acetyltransferase -
  LQ983_RS08160 - 1691873..1692313 (-) 441 WP_230622300.1 DNA polymerase III subunit psi -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11642.66 Da        Isoelectric Point: 10.8632

>NTDB_id=1151833 LQ983_RS08145 WP_230622297.1 1687678..1687980(+) (comQ) [Aggregatibacter sp. Marseille-P9115]
MILLFPKINQKGMSLLSLLVTLSIFSGLFLTFNQWGNLQRKSAVEIYQRFQAIQIVENQHQRRFLGLPCESNVLQNQIRF
RVTCTQNQVTVKYPRGEISL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=1151833 LQ983_RS08145 WP_230622297.1 1687678..1687980(+) (comQ) [Aggregatibacter sp. Marseille-P9115]
ATGATTTTGTTGTTCCCCAAAATTAATCAGAAAGGCATGAGCTTGCTGTCCTTGTTAGTGACCTTATCTATATTCAGCGG
GCTTTTCCTCACGTTTAACCAATGGGGAAATTTACAACGCAAAAGTGCGGTGGAAATTTATCAACGTTTTCAAGCCATTC
AAATTGTTGAGAATCAACATCAACGGCGTTTTCTTGGGTTGCCTTGTGAATCGAACGTGCTACAAAATCAAATTCGTTTT
CGCGTTACGTGCACGCAAAATCAGGTCACGGTGAAATATCCTCGCGGTGAAATTAGTTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(61-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

55.102

98

0.54

Multiple sequence alignment