Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   LQ983_RS00235 Genome accession   NZ_OV100759
Coordinates   49818..52247 (-) Length   809 a.a.
NCBI ID   WP_230621209.1    Uniprot ID   -
Organism   Aggregatibacter sp. Marseille-P9115     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 44818..57247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ983_RS00215 kdsB 46065..46838 (-) 774 WP_230621206.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LQ983_RS00220 - 46840..47019 (-) 180 WP_006717924.1 Trm112 family protein -
  LQ983_RS00225 lpxK 47026..48006 (-) 981 WP_230621207.1 tetraacyldisaccharide 4'-kinase -
  LQ983_RS00230 msbA 48025..49773 (-) 1749 WP_230621208.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  LQ983_RS00235 rec2 49818..52247 (-) 2430 WP_230621209.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LQ983_RS00240 dksA 52541..52978 (+) 438 WP_006717934.1 RNA polymerase-binding protein DksA -
  LQ983_RS00245 pcnB 53262..54551 (+) 1290 WP_370636590.1 polynucleotide adenylyltransferase PcnB -
  LQ983_RS00250 folK 54544..55050 (+) 507 WP_230621211.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -

Sequence

Protein


Download         Length: 809 a.a.        Molecular weight: 91714.97 Da        Isoelectric Point: 9.5493

>NTDB_id=1151808 LQ983_RS00235 WP_230621209.1 49818..52247(-) (rec2) [Aggregatibacter sp. Marseille-P9115]
MGVSLDKFAGSLIVSGITLVFLPDRFLVSWQTALYLSLLLCPLILLARGLSCHKTKYSLLWLLLFTLNLAYVHQPAIQLL
NQADNIARLPKTIHTEFIVEEILHHQQYQTLTLRAKLADNQPEQRLYANWKLKQNVNIGERYVGDLRLRPISSRLNKDGF
DRQQWYFSKRITAWAEVKSAVKIDHVFSWRQSALHHALKQTEPLSQQGLLLALGFGERAWLENATWQIYQKTNTAHLIAI
SGLHIGLAMMLGFALARLLQFTFPTHYITPTFPIFCGMILALLYSQLAGLAIPTLRAIIALALLYTIQHLRLHWTVWQLL
LRVVALLIFIDPLMLLSTSFWLSVGAVTSLIIWYQCFPLSLLHWRGKSFSHSPWGKVRYVFGLFHLQLGLLWLFTPIQLF
FFNGISLNSFIANLIAVPLYSFILVPLVLFAVLTQGSWNTWWLANDLAEKITALLAPLQDHWLAISLPHSLWITLVLTCL
FLGLLYYVYKPQKPLSSTLELAKRTRLKGFHLAAERTLSFPLQKTIYGLGCGLIAFCSTTLAYHYLSHPNWQLDTLDVGQ
GLATLIVKDGKGVLYDTGSSWAGGSMAQLEILPYLQRQGIQLEWLILSHDDNDHSGGARAMLAAYPDIQLTTASQKRYGE
KNTEENDRTFCLANKQWTWQGLHFTVLSPNNIVPRAENPDSCTLLLTDGKHNILLTGDADLSVEYNILPKLDKIHVLQVG
HHGSKTSTGEALVRHTQPDIALISSGRWNPWHFPNNEVMARLKQQGTQSYNTAETGQISLLFHGNKIEIQTARAEFSPWY
RRLIGLKGK

Nucleotide


Download         Length: 2430 bp        

>NTDB_id=1151808 LQ983_RS00235 WP_230621209.1 49818..52247(-) (rec2) [Aggregatibacter sp. Marseille-P9115]
GTGGGCGTTTCGTTAGATAAATTTGCGGGAAGTTTAATTGTAAGCGGTATCACTTTGGTGTTTTTACCCGATAGGTTTTT
AGTCTCTTGGCAAACGGCACTTTATTTATCCCTTCTTTTATGTCCGCTCATTTTGCTTGCCCGAGGTTTATCCTGTCATA
AAACGAAATACTCGCTTCTTTGGCTACTTTTGTTCACGCTCAATCTGGCTTATGTACATCAGCCGGCAATACAGTTGCTG
AACCAAGCGGACAACATTGCCCGTTTGCCGAAAACTATTCATACCGAATTTATCGTGGAAGAGATCCTACATCATCAACA
ATATCAAACCTTAACCCTCCGTGCGAAGCTCGCGGATAACCAGCCGGAACAACGCCTCTACGCCAATTGGAAACTTAAAC
AAAACGTGAATATTGGTGAACGTTATGTGGGAGATTTGCGCCTTCGCCCAATTTCCTCACGGCTCAATAAGGATGGTTTT
GATCGGCAACAATGGTACTTCAGTAAACGCATCACTGCGTGGGCAGAAGTGAAAAGTGCGGTCAAAATAGATCACGTTTT
TTCATGGCGGCAAAGCGCACTTCATCATGCGCTCAAGCAAACAGAACCGTTATCTCAACAAGGGTTATTATTGGCGCTTG
GTTTTGGCGAACGGGCATGGCTCGAAAATGCCACATGGCAAATTTATCAAAAAACCAATACGGCGCACTTGATTGCTATT
TCAGGATTACATATCGGTCTGGCGATGATGTTAGGCTTTGCCTTGGCACGCTTACTCCAATTTACGTTTCCAACCCATTA
CATCACGCCAACCTTTCCGATTTTCTGCGGCATGATTTTAGCCCTGCTTTATAGTCAACTTGCAGGACTGGCAATCCCCA
CACTACGCGCCATCATTGCCCTCGCGTTACTCTATACCATTCAGCATTTAAGGCTACATTGGACGGTGTGGCAGCTGTTA
TTGCGAGTGGTCGCACTGTTGATTTTTATCGATCCGCTCATGTTGCTTTCCACCAGTTTTTGGCTATCCGTCGGGGCGGT
CACCAGTTTAATTATTTGGTATCAATGTTTTCCGCTGTCCTTATTACACTGGCGCGGCAAATCATTCAGCCACTCGCCTT
GGGGAAAAGTGCGGTATGTTTTCGGTTTATTTCATTTGCAACTTGGTTTGCTTTGGTTATTCACGCCGATTCAATTGTTC
TTTTTTAACGGCATTTCCTTAAACAGTTTTATTGCCAATCTTATTGCCGTGCCACTTTATAGCTTCATTTTAGTGCCATT
GGTGCTGTTTGCTGTGCTCACCCAAGGCAGTTGGAACACATGGTGGCTTGCCAATGATCTGGCAGAAAAAATCACCGCAC
TTTTAGCCCCCTTGCAGGATCATTGGCTGGCTATTTCTCTTCCCCACAGTTTATGGATTACGCTTGTTTTAACCTGCCTG
TTTTTAGGCTTGCTGTATTACGTTTATAAACCCCAGAAACCTCTCTCTTCTACATTGGAATTAGCAAAACGCACTCGTTT
AAAGGGATTTCATCTCGCTGCTGAACGCACCTTAAGTTTTCCCTTACAAAAGACAATTTACGGGTTAGGTTGCGGATTGA
TTGCATTTTGCAGCACCACATTGGCGTACCACTACCTTTCCCACCCAAATTGGCAATTGGATACCTTAGATGTCGGTCAA
GGGTTAGCCACCCTGATCGTTAAAGATGGCAAAGGCGTGCTATACGACACCGGTTCAAGTTGGGCGGGGGGCAGCATGGC
GCAGTTAGAAATTCTGCCTTATTTACAGCGACAAGGCATTCAGTTGGAATGGCTGATTTTAAGTCATGATGACAACGATC
ATTCGGGCGGTGCTCGCGCGATGTTGGCCGCTTATCCCGACATTCAACTGACCACCGCTTCGCAAAAACGTTATGGCGAA
AAAAACACGGAAGAAAACGACCGCACTTTTTGCCTTGCCAACAAACAATGGACATGGCAGGGATTACACTTTACCGTACT
TTCTCCCAACAACATCGTGCCACGTGCGGAAAATCCCGATTCCTGTACGCTGCTCTTAACCGACGGTAAACACAATATTT
TACTGACAGGCGATGCCGATCTCAGCGTGGAATACAACATTTTACCCAAGCTAGATAAAATCCACGTACTACAAGTGGGA
CACCATGGCAGCAAAACCTCGACAGGAGAGGCATTAGTGCGCCACACACAGCCGGATATAGCGTTAATCTCCAGCGGGCG
TTGGAATCCCTGGCACTTTCCAAACAACGAGGTTATGGCAAGGCTAAAGCAGCAAGGTACGCAAAGTTACAATACGGCAG
AAACAGGTCAAATCAGTTTGTTATTTCATGGAAATAAAATAGAAATTCAAACTGCTCGGGCGGAATTTTCGCCATGGTAT
CGCAGATTAATTGGCTTGAAGGGCAAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(213-487)

Domain of unknown function (DUF4131) (DUF4131)

(30-180)

Metallo-beta-lactamase superfamily (Lactamase_B)

(557-745)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

52.934

96.91

0.513

Multiple sequence alignment