Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | X875_RS08150 | Genome accession | NZ_CP006953 |
| Coordinates | 1719387..1719941 (-) | Length | 184 a.a. |
| NCBI ID | WP_025342949.1 | Uniprot ID | - |
| Organism | Mannheimia varigena USDA-ARS-USMARC-1388 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1714387..1724941
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| X875_RS08125 (X875_16290) | - | 1714785..1715606 (+) | 822 | WP_025342944.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| X875_RS08130 (X875_16300) | - | 1715621..1716172 (-) | 552 | WP_025342945.1 | hypothetical protein | - |
| X875_RS08135 | - | 1716156..1716680 (-) | 525 | WP_155930838.1 | hypothetical protein | - |
| X875_RS08140 (X875_16310) | - | 1716691..1716933 (-) | 243 | WP_025342947.1 | hypothetical protein | - |
| X875_RS08145 (X875_16320) | - | 1717062..1719386 (-) | 2325 | WP_025342948.1 | Tex family protein | - |
| X875_RS08150 (X875_16330) | pilF | 1719387..1719941 (-) | 555 | WP_025342949.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| X875_RS08155 (X875_16340) | - | 1720155..1720844 (+) | 690 | WP_025342950.1 | CPBP family intramembrane glutamic endopeptidase | - |
| X875_RS08160 (X875_16360) | - | 1721050..1721829 (-) | 780 | WP_025216720.1 | MerR family transcriptional regulator | - |
Sequence
Protein
Download Length: 184 a.a. Molecular weight: 20829.53 Da Isoelectric Point: 7.1849
>NTDB_id=115179 X875_RS08150 WP_025342949.1 1719387..1719941(-) (pilF) [Mannheimia varigena USDA-ARS-USMARC-1388]
MFAKYLKNITACITLFLLAACSSTPETVSETEFNRSEAVKARINLALAYLEQNDFPKAKQNIDKALAHDPNDYLPHSVLA
YYYQQTADAQNAEKAYQQALKLSQNRPDVRNNYGTFLCKQGQFQQAYQQFEQAVASPKSYYHQADSLENIILCAKTEPNP
QKVAETLIELEKLDKPRATLLKGN
MFAKYLKNITACITLFLLAACSSTPETVSETEFNRSEAVKARINLALAYLEQNDFPKAKQNIDKALAHDPNDYLPHSVLA
YYYQQTADAQNAEKAYQQALKLSQNRPDVRNNYGTFLCKQGQFQQAYQQFEQAVASPKSYYHQADSLENIILCAKTEPNP
QKVAETLIELEKLDKPRATLLKGN
Nucleotide
Download Length: 555 bp
>NTDB_id=115179 X875_RS08150 WP_025342949.1 1719387..1719941(-) (pilF) [Mannheimia varigena USDA-ARS-USMARC-1388]
ATGTTTGCAAAATATTTGAAAAATATCACCGCTTGTATCACGCTGTTTTTGTTAGCGGCTTGTTCCTCTACTCCCGAAAC
CGTTTCAGAAACTGAATTTAACCGCTCGGAAGCGGTGAAAGCTCGGATAAACTTAGCTCTTGCTTATTTGGAGCAGAACG
ATTTCCCCAAAGCGAAACAGAATATTGACAAAGCCCTCGCTCATGACCCGAACGATTACCTGCCCCACTCGGTGCTTGCC
TACTATTATCAGCAAACTGCCGATGCACAAAATGCCGAAAAAGCCTATCAACAAGCCTTGAAATTAAGCCAAAACCGCCC
TGATGTGCGGAATAATTACGGCACTTTTTTGTGTAAGCAAGGTCAATTTCAACAGGCTTATCAACAATTTGAACAGGCGG
TGGCGAGTCCGAAGTCTTACTATCACCAAGCGGATAGTTTAGAGAACATCATTTTATGTGCGAAAACAGAGCCTAATCCG
CAAAAAGTTGCCGAAACACTGATTGAGCTTGAGAAGCTGGACAAACCTCGAGCCACGTTACTGAAAGGAAATTAA
ATGTTTGCAAAATATTTGAAAAATATCACCGCTTGTATCACGCTGTTTTTGTTAGCGGCTTGTTCCTCTACTCCCGAAAC
CGTTTCAGAAACTGAATTTAACCGCTCGGAAGCGGTGAAAGCTCGGATAAACTTAGCTCTTGCTTATTTGGAGCAGAACG
ATTTCCCCAAAGCGAAACAGAATATTGACAAAGCCCTCGCTCATGACCCGAACGATTACCTGCCCCACTCGGTGCTTGCC
TACTATTATCAGCAAACTGCCGATGCACAAAATGCCGAAAAAGCCTATCAACAAGCCTTGAAATTAAGCCAAAACCGCCC
TGATGTGCGGAATAATTACGGCACTTTTTTGTGTAAGCAAGGTCAATTTCAACAGGCTTATCAACAATTTGAACAGGCGG
TGGCGAGTCCGAAGTCTTACTATCACCAAGCGGATAGTTTAGAGAACATCATTTTATGTGCGAAAACAGAGCCTAATCCG
CAAAAAGTTGCCGAAACACTGATTGAGCTTGAGAAGCTGGACAAACCTCGAGCCACGTTACTGAAAGGAAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
63.102 |
100 |
0.641 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
48.256 |
93.478 |
0.451 |