Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | LSO75_RS02955 | Genome accession | NZ_OV040584 |
| Coordinates | 584590..585003 (+) | Length | 137 a.a. |
| NCBI ID | WP_011272047.1 | Uniprot ID | Q4QNA9 |
| Organism | Haemophilus influenzae isolate KR271 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 579590..590003
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LSO75_RS02935 (KRLU271_LOCUS547) | - | 580078..582672 (-) | 2595 | WP_044364772.1 | penicillin-binding protein 1A | - |
| LSO75_RS02940 (KRLU271_LOCUS548) | comA | 582771..583568 (+) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| LSO75_RS02945 (KRLU271_LOCUS549) | comB | 583569..584075 (+) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| LSO75_RS02950 (KRLU271_LOCUS550) | comC | 584072..584593 (+) | 522 | WP_011272048.1 | competence protein ComC | Machinery gene |
| LSO75_RS02955 (KRLU271_LOCUS551) | comD | 584590..585003 (+) | 414 | WP_011272047.1 | pilus assembly protein PilP | Machinery gene |
| LSO75_RS02960 (KRLU271_LOCUS552) | comE | 585013..586350 (+) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| LSO75_RS02965 (KRLU271_LOCUS553) | - | 586363..587049 (+) | 687 | WP_011272045.1 | ComF family protein | - |
| LSO75_RS02970 (KRLU271_LOCUS554) | nfuA | 587125..587721 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| LSO75_RS02975 (KRLU271_LOCUS555) | nudC | 587788..588582 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
| LSO75_RS02980 (KRLU271_LOCUS556) | - | 588618..589208 (+) | 591 | WP_005686892.1 | YjaG family protein | - |
| LSO75_RS02985 (KRLU271_LOCUS557) | - | 589348..589620 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15695.85 Da Isoelectric Point: 4.5625
>NTDB_id=1151733 LSO75_RS02955 WP_011272047.1 584590..585003(+) (comD) [Haemophilus influenzae isolate KR271]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=1151733 LSO75_RS02955 WP_011272047.1 584590..585003(+) (comD) [Haemophilus influenzae isolate KR271]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comD | Haemophilus influenzae Rd KW20 |
99.27 |
100 |
0.993 |