Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   P3C57_RS05705 Genome accession   NZ_OU532556
Coordinates   1115950..1116720 (-) Length   256 a.a.
NCBI ID   WP_052777121.1    Uniprot ID   A0A5Y7F2Y7
Organism   Campylobacter coli isolate     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1110950..1121720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3C57_RS05675 (CC177238_001127) aspS 1111086..1112837 (+) 1752 WP_002781656.1 aspartate--tRNA ligase -
  P3C57_RS05680 (CC177238_001128) - 1112834..1113409 (+) 576 WP_002781658.1 adenylate kinase -
  P3C57_RS05685 (CC177238_001129) ppa 1113419..1113937 (+) 519 WP_002776378.1 inorganic diphosphatase -
  P3C57_RS05690 (CC177238_001130) msrA 1113985..1114485 (+) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  P3C57_RS05695 (CC177238_001131) - 1114708..1115562 (-) 855 WP_370658880.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  P3C57_RS05700 (CC177238_001132) ruvX 1115573..1115953 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  P3C57_RS05705 (CC177238_001133) dprA 1115950..1116720 (-) 771 WP_052777121.1 DNA-processing protein DprA Machinery gene
  P3C57_RS05710 (CC177238_001134) - 1116710..1117762 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  P3C57_RS05715 (CC177238_001135) ilvC 1117765..1118787 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  P3C57_RS05720 (CC177238_001136) - 1118910..1120844 (+) 1935 WP_072224284.1 RNB domain-containing ribonuclease -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28844.25 Da        Isoelectric Point: 5.0727

>NTDB_id=1151284 P3C57_RS05705 WP_052777121.1 1115950..1116720(-) (dprA) [Campylobacter coli isolate]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPNTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=1151284 P3C57_RS05705 WP_052777121.1 1115950..1116720(-) (dprA) [Campylobacter coli isolate]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAACACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y7F2Y7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.953

100

0.77
  dprA Helicobacter pylori 26695

47.917

93.75

0.449

Multiple sequence alignment