Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   P3C57_RS02540 Genome accession   NZ_OU532556
Coordinates   501785..502435 (-) Length   216 a.a.
NCBI ID   WP_072224164.1    Uniprot ID   -
Organism   Campylobacter coli isolate     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 496785..507435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3C57_RS02510 (CC177238_000498) - 497579..498583 (+) 1005 WP_002786117.1 hypothetical protein -
  P3C57_RS02515 (CC177238_000499) tlyA 498580..499329 (+) 750 WP_002799772.1 23S rRNA (cytidine-2'-O)-methyltransferase TlyA -
  P3C57_RS02520 (CC177238_000500) - 499298..500134 (+) 837 WP_002780161.1 bifunctional riboflavin kinase/FAD synthetase -
  P3C57_RS02525 (CC177238_000501) cmoA 500138..500842 (+) 705 WP_002780163.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  P3C57_RS02530 (CC177238_000502) - 500846..501064 (-) 219 WP_002780165.1 EexN family lipoprotein -
  P3C57_RS02535 (CC177238_000503) - 501143..501775 (-) 633 WP_002826956.1 trimeric intracellular cation channel family protein -
  P3C57_RS02540 (CC177238_000504) CJE0566 501785..502435 (-) 651 WP_072224164.1 DNA/RNA non-specific endonuclease Regulator
  P3C57_RS02545 (CC177238_000505) nth 502432..503058 (-) 627 WP_002777553.1 endonuclease III -
  P3C57_RS02550 (CC177238_000506) - 503141..503962 (+) 822 WP_002777551.1 peptidylprolyl isomerase -
  P3C57_RS02555 (CC177238_000507) fbaA 503962..505026 (+) 1065 WP_002793415.1 class II fructose-bisphosphate aldolase -
  P3C57_RS02560 (CC177238_000508) - 505125..506579 (+) 1455 WP_002780172.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25108.81 Da        Isoelectric Point: 9.7703

>NTDB_id=1151275 P3C57_RS02540 WP_072224164.1 501785..502435(-) (CJE0566) [Campylobacter coli isolate]
MKLIIFLLAFTLHVFALEAYKPDKDFAPYFNPLNCSVVLDKFFYTNCYDYKLKGTKAVAYKVEVSNLKEKQIKKRARFED
DTNIPKKYRSTWSDYKNSGYTRGHIASNASFRFSKAAQTSVFLMSNITPQNAQVNATVWNEIEQRERSLAFKFQSVEVLN
LILYGKNPKFIKNGIAIPSSYVKIIKTSRFEECYEVPNNNIQSEEINDYKISCNKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=1151275 P3C57_RS02540 WP_072224164.1 501785..502435(-) (CJE0566) [Campylobacter coli isolate]
ATGAAACTTATCATCTTTTTATTAGCATTTACACTTCATGTTTTTGCTTTAGAAGCTTATAAGCCCGATAAAGATTTTGC
GCCTTATTTTAATCCTTTAAATTGCTCTGTTGTTTTGGATAAATTTTTTTATACCAATTGTTATGATTATAAACTCAAAG
GCACTAAAGCCGTAGCCTATAAAGTCGAAGTGTCCAATCTAAAAGAAAAACAGATCAAAAAACGAGCTCGCTTTGAAGAT
GACACAAATATCCCTAAAAAATACCGCAGTACTTGGAGTGATTATAAAAATAGTGGTTATACCCGAGGACATATAGCCTC
AAATGCTTCTTTTCGCTTTAGTAAAGCAGCACAAACATCGGTTTTTTTGATGAGTAATATCACTCCACAAAATGCACAAG
TTAATGCAACGGTTTGGAATGAAATCGAACAAAGAGAAAGAAGTCTTGCTTTTAAATTCCAAAGCGTTGAAGTGCTAAAT
CTAATACTTTATGGTAAAAATCCTAAATTTATTAAAAATGGCATTGCTATACCGAGTTCTTATGTTAAGATTATCAAAAC
TTCTCGGTTTGAAGAATGTTATGAAGTACCCAATAACAATATCCAGAGCGAAGAAATCAATGATTATAAAATTTCTTGCA
ATAAATTCTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(35-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

66.497

91.204

0.606
  CJE1441 Campylobacter jejuni RM1221

65.99

91.204

0.602

Multiple sequence alignment