Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   P3C57_RS01540 Genome accession   NZ_OU532556
Coordinates   301795..303213 (+) Length   472 a.a.
NCBI ID   WP_002779315.1    Uniprot ID   -
Organism   Campylobacter coli isolate     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 296795..308213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3C57_RS01525 (CC177238_000301) - 297180..297818 (+) 639 WP_002784063.1 HAD family hydrolase -
  P3C57_RS01530 (CC177238_000302) nifJ 297922..301482 (+) 3561 WP_002790306.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  P3C57_RS01535 (CC177238_000303) ctsR 301506..301817 (+) 312 WP_072224259.1 transformation system protein Machinery gene
  P3C57_RS01540 (CC177238_000304) ctsD 301795..303213 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  P3C57_RS01545 (CC177238_000305) ctsP 303206..303802 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  P3C57_RS01550 (CC177238_000306) - 303799..304395 (+) 597 WP_002779313.1 CDC27 family protein -
  P3C57_RS01555 (CC177238_000307) ctsE 304388..305950 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  P3C57_RS01560 (CC177238_000308) ctsF 305937..307112 (+) 1176 WP_002842963.1 type II secretion system F family protein Machinery gene
  P3C57_RS01565 (CC177238_000309) - 307109..307873 (-) 765 WP_002781157.1 TSUP family transporter -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53513.05 Da        Isoelectric Point: 6.5150

>NTDB_id=1151267 P3C57_RS01540 WP_002779315.1 301795..303213(+) (ctsD) [Campylobacter coli isolate]
MIRLIFIKILFFTNLIYAMECQKRLFDININEDLSIEESLKELASYCSFSVVIKDTIAKEKLKAIQSSINIHQMSLDEIF
KLFIEEQDLAYKFDGKILKISALQTRIFKINYITSVREGQSITKASVDSKPRQSEYYSAFEDNEDNMIKSMEKFDFWQNI
EKEIMILLSSSHENYDIKAPIVNPNAGLVIVTGTHSQLQRVKAYLQKLESRLKKQVIIDVSILAVNLNKNHSSGINWQNF
NIGLNSQTSDNTNSFMQIQNGQGFVKNLGLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKES
SKGTENGTTVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVEN
NQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENSNITEIVFIITPSIVDNTHIPSLRELGFKYNE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=1151267 P3C57_RS01540 WP_002779315.1 301795..303213(+) (ctsD) [Campylobacter coli isolate]
ATGATAAGATTAATATTTATTAAAATTCTATTTTTTACCAATCTTATTTATGCCATGGAATGCCAAAAACGCTTATTTGA
TATAAATATCAATGAAGATCTAAGCATAGAAGAAAGTCTAAAAGAACTTGCTAGTTATTGCTCTTTTAGCGTGGTAATTA
AAGATACAATTGCTAAGGAAAAACTAAAAGCCATTCAAAGCAGTATCAATATCCACCAAATGAGTTTAGATGAAATTTTT
AAACTTTTTATAGAAGAACAGGACCTAGCTTATAAATTTGATGGCAAGATTTTAAAAATTTCTGCTTTACAAACTAGAAT
TTTTAAAATCAACTATATTACTTCAGTTAGAGAAGGACAAAGCATAACCAAGGCTTCGGTGGATTCTAAGCCAAGGCAAA
GTGAGTATTATAGCGCTTTTGAAGATAATGAAGATAATATGATTAAAAGTATGGAAAAATTTGACTTTTGGCAAAATATA
GAAAAAGAGATTATGATTTTGCTTAGCTCCTCACATGAAAACTATGATATAAAAGCACCTATAGTCAATCCAAATGCTGG
GCTTGTTATCGTTACTGGAACGCATTCTCAGCTTCAACGCGTAAAAGCTTATTTACAAAAGCTTGAAAGTCGTCTTAAAA
AACAAGTTATTATAGATGTGAGTATACTTGCTGTAAATCTTAATAAAAATCATTCTAGTGGGATCAATTGGCAAAATTTC
AATATAGGATTAAATTCTCAAACGAGCGATAATACAAATTCTTTTATGCAAATACAAAATGGTCAAGGTTTTGTTAAAAA
TTTGGGTTTAAGAGCGAATTTGAATTTTGATTCCATTGTCAATTTTTTATCTCAAAGTGGAAAAACCAGTGTTTTATCTA
ATCCTAAATTAATGGCTTTAAACAATCAACAAGCCATTATTTCCATAGGCGATACTGTGAATTATCAAGTAAAAGAAAGC
TCTAAAGGTACTGAAAATGGCACAACTGTAAGTGAGAGTTATAGTAATTATTCTATTTTCATAGGAATTTTGCTTAATAT
TTTGCCCGAAATTTCTGATGATGGAAAAATCATGCTTAGGATCAATCCAAGTCTAAGCGACTTTAAATACCCAGAGGACA
ATAAAAGACAAAAAGAACCCCGCACTATCGCGCCTGATACAATTCAAAAAAAGCTTTCAAGTGTGGTGCAAGTAGAAAAT
AATCAAACTTTAATTTTGGGCGGACTTATCTCTCATAATCGCTCACAAAATGATAATTCTGTTAATTTTTTATCTAAAAT
TCCCATTTTGGGTTCTTTATTTAGAAGTGAAGATGAAAATTCCAATATCACAGAAATTGTTTTTATCATCACCCCAAGCA
TAGTAGATAATACACATATACCTAGTCTTAGGGAGTTAGGATTTAAGTACAATGAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(283-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

80.72

100

0.807

Multiple sequence alignment