Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   P3C57_RS01535 Genome accession   NZ_OU532556
Coordinates   301506..301817 (+) Length   103 a.a.
NCBI ID   WP_072224259.1    Uniprot ID   -
Organism   Campylobacter coli isolate     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 296506..306817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3C57_RS01525 (CC177238_000301) - 297180..297818 (+) 639 WP_002784063.1 HAD family hydrolase -
  P3C57_RS01530 (CC177238_000302) nifJ 297922..301482 (+) 3561 WP_002790306.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  P3C57_RS01535 (CC177238_000303) ctsR 301506..301817 (+) 312 WP_072224259.1 transformation system protein Machinery gene
  P3C57_RS01540 (CC177238_000304) ctsD 301795..303213 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  P3C57_RS01545 (CC177238_000305) ctsP 303206..303802 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  P3C57_RS01550 (CC177238_000306) - 303799..304395 (+) 597 WP_002779313.1 CDC27 family protein -
  P3C57_RS01555 (CC177238_000307) ctsE 304388..305950 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12297.36 Da        Isoelectric Point: 7.7715

>NTDB_id=1151266 P3C57_RS01535 WP_072224259.1 301506..301817(+) (ctsR) [Campylobacter coli isolate]
MCFCTLLSYEDFEEYFKILNTKRNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1151266 P3C57_RS01535 WP_072224259.1 301506..301817(+) (ctsR) [Campylobacter coli isolate]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCGGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553

Multiple sequence alignment