Detailed information NTG0115116

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: N900_RS11975
• Genome accession: NZ_CP006947
• Coordinates: 2618921..2619928 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae O1 str. KW3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2613921..2624928

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N900_RS11965 (N900_11925)	cysM	2615085..2615972 (+)	888	WP_001279365.1	cysteine synthase CysM	-
N900_RS11970 (N900_11930)	mutS	2616240..2618828 (+)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
N900_RS11975 (N900_11935)	rpoS	2618921..2619928 (-)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
N900_RS11980 (N900_11940)	nlpD	2620002..2620937 (-)	936	WP_000177568.1	murein hydrolase activator NlpD	-
N900_RS11985 (N900_11945)	-	2620937..2621563 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
N900_RS11990 (N900_11950)	surE	2621556..2622308 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
N900_RS11995 (N900_11955)	truD	2622310..2623395 (-)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
N900_RS12000 (N900_11960)	ispF	2623425..2623901 (-)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
N900_RS12005 (N900_11965)	ispD	2623898..2624596 (-)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
N900_RS12010 (N900_11970)	ftsB	2624593..2624877 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=115116 N900_RS11975 WP_000116737.1 2618921..2619928(-) (rpoS) [Vibrio cholerae O1 str. KW3]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=115116 N900_RS11975 WP_000116737.1 2618921..2619928(-) (rpoS) [Vibrio cholerae O1 str. KW3]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1