Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   DYY95_RS04460 Genome accession   NZ_LT996891
Coordinates   878618..879187 (-) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 24117-WT     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 873618..884187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY95_RS04415 - 874092..874700 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  DYY95_RS04420 rplL 874875..875243 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  DYY95_RS04425 rplJ 875286..875786 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  DYY95_RS04435 rplA 876058..876750 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  DYY95_RS04440 rplK 876958..877380 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  DYY95_RS04445 nusG 877561..878109 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  DYY95_RS04450 secE 878122..878304 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  DYY95_RS04455 rpmG 878360..878503 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  DYY95_RS04460 sigH 878618..879187 (-) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  DYY95_RS04465 - 879268..879792 (-) 525 WP_000664738.1 NYN domain-containing protein -
  DYY95_RS04470 rlmB 879792..880538 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DYY95_RS04475 - 880546..880950 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  DYY95_RS04480 cysS 880943..882343 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  DYY95_RS04485 cysE 882327..882974 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=1150514 DYY95_RS04460 WP_000872873.1 878618..879187(-) (sigH) [Staphylococcus aureus isolate 24117-WT]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1150514 DYY95_RS04460 WP_000872873.1 878618..879187(-) (sigH) [Staphylococcus aureus isolate 24117-WT]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984

Multiple sequence alignment