Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DYY94_RS12950 Genome accession   NZ_LT996890
Coordinates   2507061..2507747 (+) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 24117-SCV     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2502061..2512747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY94_RS12915 yqeH 2502588..2503688 (+) 1101 WP_001280136.1 ribosome biogenesis GTPase YqeH -
  DYY94_RS12920 aroE 2503702..2504508 (+) 807 WP_000666744.1 shikimate dehydrogenase -
  DYY94_RS12925 yhbY 2504512..2504802 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  DYY94_RS12930 nadD 2504805..2505374 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  DYY94_RS12935 yqeK 2505364..2505948 (+) 585 WP_001019326.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DYY94_RS12940 rsfS 2505949..2506302 (+) 354 WP_001088020.1 ribosome silencing factor -
  DYY94_RS12945 - 2506305..2507021 (+) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  DYY94_RS12950 comEA 2507061..2507747 (+) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  DYY94_RS12955 - 2507839..2508300 (+) 462 WP_000439693.1 ComE operon protein 2 -
  DYY94_RS12960 comEC 2508305..2510506 (+) 2202 WP_001641560.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DYY94_RS12965 holA 2510563..2511537 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  DYY94_RS12970 rpsT 2511582..2511833 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=1150493 DYY94_RS12950 WP_001788928.1 2507061..2507747(+) (comEA) [Staphylococcus aureus isolate 24117-SCV]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1150493 DYY94_RS12950 WP_001788928.1 2507061..2507747(+) (comEA) [Staphylococcus aureus isolate 24117-SCV]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969

Multiple sequence alignment