Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DYY94_RS10395 Genome accession   NZ_LT996890
Coordinates   2045337..2045732 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 24117-SCV     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2040337..2050732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY94_RS10365 - 2041596..2042000 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  DYY94_RS10370 - 2042337..2042429 (+) 93 WP_031835036.1 hypothetical protein -
  DYY94_RS10375 - 2042561..2042794 (+) 234 WP_000384523.1 DUF1146 family protein -
  DYY94_RS10380 murA 2042905..2044170 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DYY94_RS10385 fabZ 2044204..2044644 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DYY94_RS10390 - 2044703..2045143 (-) 441 WP_000846746.1 YwpF-like family protein -
  DYY94_RS10395 ssb 2045337..2045732 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  DYY94_RS10400 sceD 2046121..2046816 (+) 696 WP_000752001.1 lytic transglycosylase SceD -
  DYY94_RS10410 tenA 2047396..2048085 (+) 690 WP_000396079.1 thiaminase II -
  DYY94_RS10415 thiD 2048078..2048908 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DYY94_RS10420 thiM 2048892..2049683 (+) 792 WP_001108480.1 hydroxyethylthiazole kinase -
  DYY94_RS10425 thiE 2049685..2050326 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1150482 DYY94_RS10395 WP_000932694.1 2045337..2045732(+) (ssb) [Staphylococcus aureus isolate 24117-SCV]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1150482 DYY94_RS10395 WP_000932694.1 2045337..2045732(+) (ssb) [Staphylococcus aureus isolate 24117-SCV]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment