Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DYY93_RS12950 Genome accession   NZ_LT996889
Coordinates   2507060..2507746 (+) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 24117-REV     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2502060..2512746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY93_RS12915 yqeH 2502587..2503687 (+) 1101 WP_001280136.1 ribosome biogenesis GTPase YqeH -
  DYY93_RS12920 aroE 2503701..2504507 (+) 807 WP_000666744.1 shikimate dehydrogenase -
  DYY93_RS12925 yhbY 2504511..2504801 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  DYY93_RS12930 nadD 2504804..2505373 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  DYY93_RS12935 yqeK 2505363..2505947 (+) 585 WP_001019326.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DYY93_RS12940 rsfS 2505948..2506301 (+) 354 WP_001088020.1 ribosome silencing factor -
  DYY93_RS12945 - 2506304..2507020 (+) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  DYY93_RS12950 comEA 2507060..2507746 (+) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  DYY93_RS12955 - 2507838..2508299 (+) 462 WP_000439693.1 ComE operon protein 2 -
  DYY93_RS12960 comEC 2508304..2510505 (+) 2202 WP_001641560.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DYY93_RS12965 holA 2510562..2511536 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  DYY93_RS12970 rpsT 2511581..2511832 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=1150451 DYY93_RS12950 WP_001788928.1 2507060..2507746(+) (comEA) [Staphylococcus aureus isolate 24117-REV]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1150451 DYY93_RS12950 WP_001788928.1 2507060..2507746(+) (comEA) [Staphylococcus aureus isolate 24117-REV]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969

Multiple sequence alignment