Detailed information NTG0115043

Bioinformatically predicted

Overview

• Name: pilF
• Type: Machinery gene
• Locus tag: X808_RS02300
• Genome accession: NZ_CP006943
• Coordinates: 486703..487257 (+)
• Length: 184 a.a.
• NCBI ID: WP_025216722.1
• Uniprot ID: -
• Organism: Mannheimia varigena USDA-ARS-USMARC-1296
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 481703..492257

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
X808_RS02290 (X808_4410)	-	484815..485594 (+)	780	WP_025216720.1	MerR family transcriptional regulator	-
X808_RS02295 (X808_4430)	-	485800..486489 (-)	690	WP_025216721.1	CPBP family intramembrane glutamic endopeptidase	-
X808_RS02300 (X808_4440)	pilF	486703..487257 (+)	555	WP_025216722.1	type IV pilus biogenesis/stability protein PilW	Machinery gene
X808_RS02305 (X808_4450)	-	487258..489582 (+)	2325	WP_025216723.1	Tex family protein	-
X808_RS02310 (X808_4460)	-	489623..490444 (-)	822	WP_025216724.1	SDR family NAD(P)-dependent oxidoreductase	-
X808_RS02315 (X808_4470)	-	490446..491003 (-)	558	WP_025216725.1	nitroreductase family protein	-

Sequence

Protein

• Length: 184 a.a.
• Molecular weight: 20856.59 Da
• Isoelectric Point: 7.6840

>NTDB_id=115043 X808_RS02300 WP_025216722.1 486703..487257(+) (pilF) [Mannheimia varigena USDA-ARS-USMARC-1296]
MFAKYLKNITACITLFLLAACSSTPETVSETEFNRSEAVKARINLALAYLEQNDFPKAKQNIDKALAHDSNDYLPHSVLA
YYYQQTADAQNAEKAYQQALKLSQNRPDVRNNYGTFLCKQGQFQQAYQQFEQAVASPKPYYHQADSLENIILCAKKEPNP
QKVAETLIELEKLDKPRATLLKGN

Nucleotide

• Length: 555 bp

>NTDB_id=115043 X808_RS02300 WP_025216722.1 486703..487257(+) (pilF) [Mannheimia varigena USDA-ARS-USMARC-1296]
ATGTTTGCAAAATATTTGAAAAATATCACCGCTTGTATCACGCTGTTTTTGTTAGCGGCTTGTTCCTCTACTCCCGAAAC
CGTTTCAGAAACTGAATTTAACCGTTCGGAAGCGGTGAAAGCTCGTATAAACTTAGCTCTTGCTTATTTGGAGCAGAACG
ATTTCCCCAAAGCGAAACAGAATATTGACAAAGCCCTCGCTCATGACTCGAACGATTACCTGCCCCACTCGGTGCTTGCC
TACTATTATCAGCAAACTGCCGATGCACAAAATGCCGAAAAAGCCTATCAACAAGCCTTGAAATTAAGCCAAAACCGCCC
TGATGTGCGGAATAATTACGGCACTTTTTTATGTAAACAAGGTCAATTTCAGCAGGCTTATCAACAATTTGAACAGGCAG
TGGCAAGTCCGAAGCCTTATTATCACCAAGCGGATAGTTTAGAGAACATCATTTTATGTGCGAAAAAAGAGCCTAATCCG
CAAAAAGTTGCCGAAACACTTATTGAGCTTGAGAAGCTGGACAAACCTCGAGCCACGTTACTGAAAGGAAATTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_17) (95-126)

• Tetratricopeptide repeat (TPR_8) (40-67)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilF	Glaesserella parasuis strain SC1401	63.102	100	0.641
pilF/pilF2	Haemophilus influenzae Rd KW20	48.256	93.478	0.451