Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   HUW69_RS17085 Genome accession   NZ_LT992491
Coordinates   787793..789853 (-) Length   686 a.a.
NCBI ID   WP_084997730.1    Uniprot ID   -
Organism   Vibrio cholerae strain 4295STDY6534200     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 782793..794853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW69_RS17070 (SAMEA4374365_03465) clcA 783811..785217 (+) 1407 WP_084997732.1 H(+)/Cl(-) exchange transporter ClcA -
  HUW69_RS17075 (SAMEA4374365_03466) - 785363..786325 (+) 963 WP_084997731.1 TDT family transporter -
  HUW69_RS17080 (SAMEA4374365_03467) cqsA 786522..787691 (+) 1170 WP_001039919.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  HUW69_RS17085 (SAMEA4374365_03468) cqsS 787793..789853 (-) 2061 WP_084997730.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  HUW69_RS17090 (SAMEA4374365_03469) - 789950..792988 (-) 3039 WP_174566672.1 AAA family ATPase -
  HUW69_RS17095 (SAMEA4374365_03470) - 792990..794129 (-) 1140 WP_174566673.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78083.98 Da        Isoelectric Point: 5.5106

>NTDB_id=1150299 HUW69_RS17085 WP_084997730.1 787793..789853(-) (cqsS) [Vibrio cholerae strain 4295STDY6534200]
MIVSMDVIKRVYQYAEPNLSLVGWMGMLGFPAYYFIWEYWFPQSYENLGLRCAAAVLFGGLVFRDSLPKKWQRYMPGYFL
FTIGFCLPFFFAFMMLMNDWSTIWAMSFMASIFLHILLVHDTRVMALQALFSVLMAYLAVYGLTDFHPTTLIEWQYIPIF
LFTYVFGNLCFFRNQVSHETKVSIAKTFGAGIAHEMRNPLSALKTSIDVVRTMIPKPQAAAHADYSLDAQELDLLHQILN
EADDVIYSGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQQSVQLEVHQPFEFFGSDTLLTYALFN
LLKNAFYYQKEHFSVRITIAQTGEDNIIRVRDNGVGIAPEMLEDIFRDFYTFGKNGSYGLGLPFCRKVMTAFGGTIRCTS
QQGQWTEFVLTFPRYDSDTVNEIKAELLKTKSIIYIGSNQAIVRELTQLAVEDEFGFTAISAQQAIRRQDYEFEFELILL
DLDDATAQGELLPKLEGTLSFAGGCIGYVYDPGKTYAVNINRYLRIQPISIHSILRKPKTIIERLLFEQESLSMNRNVIP
LQKSRHERRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEATRLIRGSEHAY
KNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAWV

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=1150299 HUW69_RS17085 WP_084997730.1 787793..789853(-) (cqsS) [Vibrio cholerae strain 4295STDY6534200]
GTGATAGTGAGCATGGATGTAATAAAGAGAGTGTATCAATACGCAGAACCTAATCTGTCCTTAGTCGGATGGATGGGCAT
GCTTGGCTTTCCTGCCTACTACTTCATCTGGGAATATTGGTTTCCGCAATCTTACGAAAATTTAGGGCTGCGTTGTGCGG
CAGCGGTGCTGTTCGGTGGGCTGGTGTTTCGCGATTCTCTACCTAAGAAATGGCAGCGGTATATGCCGGGCTATTTTTTA
TTCACCATAGGTTTCTGCTTACCCTTTTTCTTCGCTTTTATGATGTTAATGAATGACTGGTCGACGATTTGGGCGATGTC
GTTTATGGCGTCCATTTTCCTGCATATTCTCTTAGTGCACGATACGAGAGTGATGGCGTTACAAGCTCTTTTCTCAGTGT
TGATGGCTTATCTCGCCGTATATGGGTTGACGGATTTTCATCCTACCACTTTGATTGAATGGCAATATATACCGATTTTT
TTGTTCACTTATGTGTTTGGAAATTTGTGTTTTTTCCGTAACCAAGTCTCGCATGAAACCAAAGTGTCGATTGCTAAAAC
ATTCGGAGCAGGGATTGCCCACGAAATGCGTAATCCGCTCAGTGCGTTGAAAACGTCGATTGATGTTGTGCGGACTATGA
TCCCTAAACCGCAAGCTGCGGCACATGCGGATTATTCCTTGGATGCACAAGAGCTGGATCTGCTGCATCAAATTTTGAAT
GAAGCGGATGATGTTATTTACTCTGGCAATAATGCAATTGATTTGCTTCTTACCTCGATAGATGAAAACCGTGTATCTCC
GGCGAGCTTTAAAAAACACTCAGTAGTGGATGTGATTGAAAAAGCCGTGAAAACTTTTCCGTATAAAAACGCGGCAGATC
AGCAGTCAGTACAACTTGAAGTGCATCAGCCGTTTGAGTTTTTTGGCAGTGATACTCTATTGACCTATGCGCTATTTAAC
CTTTTGAAAAATGCCTTCTATTACCAGAAAGAGCATTTCTCAGTTCGTATTACAATCGCTCAAACTGGCGAGGATAACAT
TATCCGAGTTCGTGATAATGGAGTAGGCATTGCTCCAGAGATGTTGGAAGACATTTTTCGTGATTTCTATACCTTCGGTA
AAAACGGTAGCTATGGGCTAGGATTACCGTTCTGTCGTAAAGTGATGACGGCATTTGGAGGGACGATTCGCTGCACGTCT
CAACAAGGTCAATGGACCGAATTTGTATTAACCTTCCCCCGTTACGATTCCGATACGGTCAATGAGATAAAAGCAGAGCT
GCTGAAAACCAAATCGATCATTTACATCGGATCAAATCAAGCCATCGTTCGAGAGTTAACTCAGCTAGCGGTGGAAGATG
AGTTTGGCTTTACCGCTATTTCTGCACAGCAAGCGATAAGACGCCAAGACTATGAGTTTGAATTCGAACTTATTCTGCTT
GATCTCGATGACGCTACAGCGCAAGGAGAGTTGCTGCCCAAACTCGAAGGTACATTGAGTTTTGCAGGAGGTTGTATCGG
CTATGTGTATGACCCAGGTAAAACGTATGCGGTAAACATCAATCGTTATCTGCGCATCCAACCGATCAGTATTCACTCTA
TTCTCAGAAAGCCTAAGACAATCATCGAGCGCTTGTTGTTTGAACAAGAGTCTTTATCGATGAATCGTAACGTGATCCCT
TTGCAAAAGAGTCGGCATGAACGGCGCATTTTGGTGGTTGACGATAATCAATCGATCCGAACTTTTACGGCCATTTTGCT
TGAACAACAAGGCTATGAAGTGGTGCAAGCCAATGATGGGAGTGAAGTGCTCAAGCATATGGAGAGCCAAAACATCGATT
TAGTGTTGATGGACATTGAAATGCCCAATGTTGGTGGATTGGAAGCGACGCGTTTAATTCGTGGCTCTGAACATGCTTAC
AAAAATATTCCGATCATCGGTTATACCGGTGATAACAGCCCCAAAACTTTGGCTCTGGTACAAACCTCTGGCATGAATGA
TTTTATTGTCAAGCCAGCGGACCGTGATGTATTGCTAAATAAAGTGGCAGCTTGGGTGTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(312-414)

Response regulator receiver domain (Response_reg)

(570-682)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

96.064

100

0.961

Multiple sequence alignment