Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   HUW69_RS17080 Genome accession   NZ_LT992491
Coordinates   786522..787691 (+) Length   389 a.a.
NCBI ID   WP_001039919.1    Uniprot ID   -
Organism   Vibrio cholerae strain 4295STDY6534200     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 781522..792691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW69_RS17065 (SAMEA4374365_03464) - 782473..783345 (-) 873 Protein_664 CobW family GTP-binding protein -
  HUW69_RS17070 (SAMEA4374365_03465) clcA 783811..785217 (+) 1407 WP_084997732.1 H(+)/Cl(-) exchange transporter ClcA -
  HUW69_RS17075 (SAMEA4374365_03466) - 785363..786325 (+) 963 WP_084997731.1 TDT family transporter -
  HUW69_RS17080 (SAMEA4374365_03467) cqsA 786522..787691 (+) 1170 WP_001039919.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  HUW69_RS17085 (SAMEA4374365_03468) cqsS 787793..789853 (-) 2061 WP_084997730.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43528.64 Da        Isoelectric Point: 6.4943

>NTDB_id=1150298 HUW69_RS17080 WP_001039919.1 786522..787691(+) (cqsA) [Vibrio cholerae strain 4295STDY6534200]
MNKPQLPDFIQNKIDHYIENYFDINKNGKHLVLGKQASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFL
QNDYDKPMIEKRLAKLTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRM
LIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIKSADNRRQHLDRMARKLRIGLSQLGLTIRSESQIIGL
ETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQITKIIEVCSDAVNCGDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=1150298 HUW69_RS17080 WP_001039919.1 786522..787691(+) (cqsA) [Vibrio cholerae strain 4295STDY6534200]
ATGAACAAGCCTCAACTTCCTGATTTTATTCAGAACAAGATAGATCACTATATTGAAAATTATTTTGATATAAACAAAAA
CGGTAAACACCTTGTATTGGGCAAACAAGCCAGCCCTGATGACATTATTTTGCAAAGTAATGATTATCTCGCATTGGCCA
ATCATCCGTTGATCAAAGCTCGTTTGGCGAAGTCATTACTGGAAGAACAACAAAGCTTATTTATGTCAGCCTCATTTCTA
CAAAATGACTATGACAAACCCATGATTGAGAAACGTTTAGCTAAGCTCACAGGCTTTGATGAATGCCTATTATCTCAATC
TGGTTGGAACGCAAACGTCGGTTTATTACAAACCATCTGCCAGCCCAATACGAATGTTTACATTGATTTTTTCGCGCACA
TGTCGTTATGGGAAGGGGCACGCTACGCCAATGCTCAGGCGCATCCTTTTATGCATAATAACTGTGACCATTTACGTATG
CTGATTCAACGTCATGGTCCTGGGATCATTGTCGTAGACTCGATTTACAGCACTTTAGGTACGATTGCACCGCTGGCGGA
ACTGGTCAATATCAGCAAAGAGTTTGGCTGCGCCTTATTAGTCGATGAATCCCACTCTTTGGGTACACATGGCCCTAATG
GTGCGGGCTTACTGGCAGAATTAGGCCTTACTCGTGAAGTGCATTTTATGACCGCAAGTTTGGCCAAAACCTTTGCTTAT
CGCGCAGGAGCCATTTGGTGTAACAATGAAGTGAATCGCTGCGTTCCTTTTATTAGTTATCCAGCTATTTTTAGTTCTAC
TTTGCTGCCTTATGAAGCGGCAGGATTAGAAACCACATTAGAGATTATTAAGTCTGCGGATAATCGGCGTCAGCATTTAG
ATCGTATGGCGAGAAAATTACGCATAGGATTATCCCAGTTGGGATTAACCATTCGAAGTGAAAGCCAAATTATTGGTCTA
GAAACAGGAGATGAACGAAATACCGAAAAAGTTCGGGATTATTTAGAAAGTAATGGAGTGTTTGGCTCAGTATTCTGCCG
CCCGGCAACTTCGAAGAATAAAAACATTATTCGTTTATCACTCAATAGTGATGTGAACGATGAACAAATCACCAAAATAA
TTGAGGTTTGCTCTGATGCGGTCAACTGTGGTGATTTTTATTTCCGTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(41-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

98.972

100

0.99

Multiple sequence alignment